Information report for 474535
Gene Details
Functional Annotation
- Refseq: XP_020870593.1 — trihelix transcription factor ASIL1
- Swissprot: Q9SYG2 — ASIL1_ARATH; Trihelix transcription factor ASIL1
- TrEMBL: D7KLE1 — D7KLE1_ARALL; Uncharacterized protein (Fragment)
- STRING: fgenesh2_kg.1__4489__AT1G54060.1 — (Arabidopsis lyrata)
- GO:0009733 — Biological Process — response to auxin
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0048831 — Biological Process — regulation of shoot system development
- GO:0005730 — Cellular Component — nucleolus
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Arabidopsis thaliana: AT1G54060.1
- Brassica napus: GSBRNA2T00034800001, GSBRNA2T00125531001, GSBRNA2T00033886001, GSBRNA2T00053746001, GSBRNA2T00114125001
- Brassica oleracea: XP_013588058.1, XP_013591757.1, XP_013623149.1
- Brassica rapa: XP_009107062.1, XP_009147554.1, XP_009106943.1
- Raphanus raphanistrum: RrC9138_p2
Sequences
CDS Sequence:
- >474535|Arabidopsis_lyrata|Trihelix|474535
ATGGAGGACGACGACGAGATTCAGTCAATTCCATCTCCGGGAGATTCTTCTCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTACCAACAAACGACGTTACGGTGGCCGTCGTGAAGAAACCACAAACGCTAGTTTCTTCTCAATCTCCGTCGAGGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACCGGTGGTGGTAGCGGTAATACCAGAAACGGACGAGGAGGAAGCGGTGGTGGTGGCGGAGGAAGAGACGATTGTTGGAGCGAAGAAGCAACCAAGGTTCTAATCGACGCTTGGGGAGATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTGAGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATACAGTGTAAGAACAGGATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCTAAGATTGCTTCTGGTGATGGACCTAGTAAATGGGTCTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACGACAGTTGTTGCTTCTTCGAAAGCTTCGGAGAAGGCTCCTATGGGAGGAGGTCTCCGTTCGAATATTTATAAACGGCAAGCTAAAGGAAATCAGATTGTGCAAGGAGGGGATTTGAAGAGAAGCTCTAATTCGATGCGTTGGCATTTTAGGAAACGAAGTGCTTCTGAGACTGAGTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGACTCTGCTGAGAGTCTGCCACCGTTGCAACCGCCTCAACCGCTTTCGTTTCATCTGCCCAAGCGGTTGAAGGTGGATAAGAGTGGAGATGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGCTTATGAGAAGGCGGAAACGGCTAAGCTTAAGCTAATGGCGCAACTGGAAAAGGAGAGGATGAAATTCGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGATAACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGCTGACGATGATGATCGCAATGGCAAGAATAA ATGTTAAATGGTTCAACTGTTGAGGCTCCATTGACTATAAATATACCTAATGGCCAAACTTCTAGAACTGGTATGGATAATTCATTCCATGGTACTTCTATGCACGGGACAAATATTACAGTCCCAGTTGCAGTGCAAAAACAACCATTGGCAACTGTGGCGGCTGCTGAGGGATTGGATACCCATGGACTAGCTTGTATCAACTTGCCTCCTCGACGAAAGCGTAAACCATGGTCAGCAGCAGAAGACATGGAACTCATTGCTGCGGTCCAAAAATGCGGTGAAGGAAACTGGGCAAACATATTGAAAGGGGACTTTAAGGGAGACAGAACAGCTTCACAACTCTCTCAGAGGTGGGCCATTATTAGAAAACGGCAGGGAACCATTGTCGGGAATGGCTCACAGCTTTCAGAGGCTCAGCTGGCAGCTCGTCGCGCAATGTCCCTAGCTCTTAATATGCCTATGGGAGATAACTTGAAAGCAGCTTGTCCAATCAGCGCTGGCGTGGGGCAAAATTCAGGCGCTGGACCTAGTAACTCTTCACATTCTGTTGCTGCTGACTTTGCATCTGGTGGTGCACAATCCCAGCATCAGCAAGATCCGTTGTCGTCAAAACCTCGGATAGTCCCAAAAAAGCCATTGCCAAAACCTAATACGAGTCCTGATTCAATGGTCAAAGTTGCTGCTGTGGCTGCAGGTGCCCGCGTTGCTACCACTTCAAATGGTGCCTCATTGCTCAAGACAGTACAATCTAAATCTGCCGTCCAAATACCTAGAGGAGGTCCTGCAGTCAAATCTCATGTCCCAGTTAGTACAAATGGCTTGCCCAGTAATGTGCACTTTATTTGTACCGGCCTGGTGTCCCATTCCACAGGCCCATCAAATGCCTCACGGCCTGAAACTCTGCAGGTGCTGGGCCACTCTTTGAAACCTGTATCATCGGCTGTTCAACCTAGCCCTGCTGGTACTTCATCCAGACCAAATGCTTCAGCTGCACCTGATGCCCCAACATGTGCTCCAGCTGCTGAGCTTGAAGAAAATACTAAGCAAAAGCTTCTCCAAAAAAGTCAAACTACCACTCTGTCTAATGCACAAAGTGAGAAACAAGTAGGAGTTGTAGGTGCTTCTGGTGATAAGGCACTACCACCACAAGTCCAACAAGATAAACTTCCTGCATCAAGCAACCCGTTCATAGAGAAAGCTGAAGATCAAACCTCATCGTTCGGTGATGAAGTAAAGGAGGATAGACAAGATGATCAAGATTCTGTTCCAGGCATTCATGTTCAAGAAAAGTTAATAAATGATACAACTAATCCTAGTAAAGCACTAGCTAGAACTGAGAATGGGAGTACTAATGGTAGTGATCTCAATAAGGCACCAACTAGAAATCAGAATGGAAGAGAATGA
Protein Sequence:
- >474535|Arabidopsis_lyrata|Trihelix|474535
MEDDDEIQSIPSPGDSSLSPQAPPSPPILPTNDVTVAVVKKPQTLVSSQSPSRNALALVVHTPSVTGGGSGNTRNGRGGSGGGGGGRDDCWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVNKSRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASGDGPSKWVFFKKLESLIGGTTTVVASSKASEKAPMGGGLRSNIYKRQAKGNQIVQGGDLKRSSNSMRWHFRKRSASETESESDPEPEASPDSAESLPPLQPPQPLSFHLPKRLKVDKSGDGGSGVGDVARAILGFTEAYEKAETAKLKLMAQLEKERMKFAKEMELQRMQFLKTQLEITQNNQEEEERSRQRGERRIADDDDRNGKN