Information report for 462948901
Gene Details
Functional Annotation
- Refseq: XP_002449041.1 — uncharacterized protein LOC8070669
- TrEMBL: A0A0A9LZQ4 — A0A0A9LZQ4_ARUDO; Uncharacterized protein
- STRING: Sb05g003890.1 — (Sorghum bicolor)
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Hordeum vulgare: MLOC_66934.1, MLOC_5226.1
- Panicum virgatum: Pavir.8NG045400.1.p, Pavir.8KG043200.1.p, Pavir.3KG039000.1.p
- Setaria italica: Seita.8G043200.1.p
- Setaria viridis: Sevir.8G042400.1.p, Sevir.7G305500.4.p
- Triticum aestivum: Traes_1BL_5C07BE2D0.1, Traes_1DL_83218C6CE.1, Traes_1AL_3493FCCBE.1
- Zea mays: GRMZM2G126148_P03, GRMZM2G126148_P02, GRMZM2G126148_P01
Sequences
CDS Sequence:
- >462948901|Eragrostis_tef|Trihelix|462948901
ATGAAATCAGCAAGGGTGGAGAAACTGTTCTATGGTGAACCTTTGGAGCAAATGGAAGGAAACAACTTATCCCCTGGAAACACGATGCAAGGAGCTCACTTTGGCAATTTAGATTTACATGGAAGCTCCATGCAAATGCATGCTCCAAATTCAGGAAAACAGCTCTTCAGCAACTCCCACATGCCAGGGAATATCACAATGTGTATGAATAGGGTTACAGAACCTGATGACTTTCCTGGGTTTCAATTCAAAGAACATGGACAAACTGATAACAACCAACACCACAGTCATCCCTCAAAGAACTGCATGAGTGATGATGAGGAACATGAGATGACTGAGGATGCCAATGATACCCCGAGTGGCAAAGGCAAGAAGGGCTCTGCGTGGCATCGGATGAAGTGGACAGATTCAATGGTAAAGCTTTTGATTACTGCAGTGTCTTACACGGGGGAGGATCCTGGAGCTGATTTAGGTGGTGGCAGGAGGAACTTCACAATAATGCAGAAGAAAGGCAAATGGAAGGCGATATCAAAGGTCATGGGCGAGAGAGGCTGTCATGTGTCACCACAGCAGTGTGAGGATAAGTTCAATGACCTCAATAAGAGATATAAAAGGCTCACTGACATCCTTGGGCGGGGTACTGCTTGCAATGTTGTGGCAAACCCAGCACTTCTTGAGAGCATGAATCATCTTTCCGATAAGATGAAAGATGACGCGAAGAAAATAATGAGTTCAAAGCACTTGTTTTATGAGGAGATGTGTTCCTACCATAATAACAACCGTGCGAATTTGCCTGAAGATCCTGCACTTCAACATTCACTTCAGCTCGCTCTTAGATGTAAAGAAGATTATGATTCTAGGAGGGATGTGAGTGGAGATGCTGATGAAGATGATCAAAGTGCTGATTCTGATTATTATGAGGACTATGAAGAGCATCATGCTGTACATACGAACATGAGGGAGCCCTCCATGCTCAAAAGGATGCGGCACACTGACATGGCTTTTGTGAACTCATGTTCTCATGAAGGCAGTGCGAGGTCTGATCCACATGGCATCACAGTGGACATCAACAAGGTCTTACCAGATGGAACCAACTTAGTTTTGTCACAAAAGGACTTGGCTTCACAATCACTAGAGATTCAGAAACATCGCTTGCAGATTGATGCAAAAGAACTGGAACTCACACAGCAATGTCTCAAGTGGGAGCGATTCAAGAAAAAGAAGGACAGGGAGTTGGAAAGAATGACACTGGAGAATGAACATATGAGGATTGAGAATAAACGTTTGGAACTCGAGTTGAGACAAAAGGAGCTAGAGCTAGAGTTAAAGCTAAAAGGACAGGGGAATCATTGCTGTCCAACTGAGATGACTGAGGATGCCAATGATACCCCGAGTGGCAAAGGCAAGAAGGGCTCTGCGTGGCATCGGATGAAGTGGACAGATTCAATGGTAAAGCTTTTGATTACTGCAGTGTCTTACACGGGGGAGGATCCTGGAGCTGATTTAGGTGGTGGCCGGAGGAACTTCACAATAATGCAGAAGAAAGGCAAATGGAAGGCGATATCAAAGGTCATGGGCGAGAGAGGCTGTCATGTGTCACCACAGCAGTGTGAGGATAAGTTCAATGACCTCAATAAGAGATATAAAAGGCTCACTGACATCCTTGGTCGGGGTACTGCTTGCAATGTTGTGGCAAACCCAGCACTTCTTGATAACATGAATCATCTTTCCGATAAGATGAAAGATGACGCAAAGAAAATAATGAGTTCAAAGCACTTATTTTATGAGGAGATGTGTTCCTACCATAACAACAACCGTGCAAATTTGCCTGAAGATCCTGCACTTCAACATTCACTACAGCTCGCTCTTAGATGTAAAGAAGACCATGATTCTAGGAGGGATGTGAGTGGTGATGCTGATGAAGATGATCAAAGTGCTGATTCTGATTATTATGAGGACTATGAAGAGCATCATGCTGTGCATACGAACATGAGGGAGCCCTCCATGCTCAAAAGGATGCGGCACAGTGATATGGCTTTTGTGAACTCAAGTTCTCATGAAGGTAGTGCGAGGTCTGATCCCCATGGCATCACCGTGGACATCAACAAAGTTTTACCAGATGGAACCAACTTAGTTTTGTCGCAAAAGAGCTTGGCTTCACAATCACTAGAGATTCAGAAACGTCGCCTGCAGATTGATGCAAAAGAACTGGAACTTACACAGCAACGTCTCAAGTGGGAGCGATTCAAGAAGAAGAAGGACAGGGAGTTGGAAAGAATGACACTGGAGAATGAACATATGAGGATTGAGAATAAACGTTTGGAACTTGAGTTGAGACAAAGGGAGCTAGAGCTAGAGCCAAGAACAGGTGAAGGTGTGAAGTTTCAGTGCGGCTTTGTTCATGAAAATGACCTGGGTACAGCGTCCACGGCTCCACCTACAAAGGGAGGCAGAAACTGGGCCTCCACCTGCATAAAGAACACTCAGGCTGAAGAAGAACAATTGATGAATCTTAGAGGCCAGATGCCGAGAAAGGCGGAGGAGATATTCTCCCAGTTGTTGATCAATGTGATGCCGTCATAG
Protein Sequence:
- >462948901|Eragrostis_tef|Trihelix|462948901
MKSARVEKLFYGEPLEQMEGNNLSPGNTMQGAHFGNLDLHGSSMQMHAPNSGKQLFSNSHMPGNITMCMNRVTEPDDFPGFQFKEHGQTDNNQHHSHPSKNCMSDDEEHEMTEDANDTPSGKGKKGSAWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNFTIMQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVANPALLESMNHLSDKMKDDAKKIMSSKHLFYEEMCSYHNNNRANLPEDPALQHSLQLALRCKEDYDSRRDVSGDADEDDQSADSDYYEDYEEHHAVHTNMREPSMLKRMRHTDMAFVNSCSHEGSARSDPHGITVDINKVLPDGTNLVLSQKDLASQSLEIQKHRLQIDAKELELTQQCLKWERFKKKKDRELERMTLENEHMRIENKRLELELRQKELELELKLKGQGNHCCPTEMTEDANDTPSGKGKKGSAWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNFTIMQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVANPALLDNMNHLSDKMKDDAKKIMSSKHLFYEEMCSYHNNNRANLPEDPALQHSLQLALRCKEDHDSRRDVSGDADEDDQSADSDYYEDYEEHHAVHTNMREPSMLKRMRHSDMAFVNSSSHEGSARSDPHGITVDINKVLPDGTNLVLSQKSLASQSLEIQKRRLQIDAKELELTQQRLKWERFKKKKDRELERMTLENEHMRIENKRLELELRQRELELEPRTGEGVKFQCGFVHENDLGTASTAPPTKGGRNWASTCIKNTQAEEEQLMNLRGQMPRKAEEIFSQLLINVMPS