Information report for 462919962
Gene Details
Functional Annotation
- Refseq: XP_004952679.1 — uncharacterized protein LOC101761263 isoform X1
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: K3YPU2 — K3YPU2_SETIT; Uncharacterized protein
- STRING: Pavir.Ab01874.1.p — (Panicum virgatum)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Brachypodium distachyon: Bradi3g45230.1.p
- Panicum virgatum: Pavir.1KG323800.1.p, Pavir.1KG323800.3.p
- Setaria italica: Seita.1G185600.1.p
- Setaria viridis: Sevir.1G189500.1.p
- Triticum aestivum: Traes_6BL_1392D6149.2
Sequences
CDS Sequence:
- >462919962|Eragrostis_tef|Trihelix|462919962
AATCCGAAACTCGAAAAAGACCCAGCTGAGGGCCGCAGCAGACGACTCCGTTATCTTCTTCGCTTCCCTCCCTCTCTGCTCTTCACTCTGCACCTCTCCCCTCCCCCTCCCTCCCATCTCCTCTCTACCGCCGCCGCCATGGTGGCGCTCGCCTCCGTCTCATCTCTTTGCCCATGCGGCCTCGGTCGCCGCCTCTCCGCTACCGCCCCTGCCTCCACCTCCGCATCTGTCTCTGCCACAATCTCATGCTGCGCGGTCGCAACTCCGTCCTCTGGGAAAGGGCCTCATGTATCTAGGACACCACGTGGAAGGCTGAGGAGAACCGAGGGTGCCACTAAGAGCTTGGAAGATTCGGTCAAGCGAAAGATGGAGCAGTTCTATGAAGGGGTGGATGGTCCACCCCTCCGAGTCCTCCCAATCGGCGGTCTTGGGGAAATCGGCATGAACTGCATGCTCGTGGGGAATTATGACCGATATATATTGATCGATGCCGGAGTCATGTTCCCTGACTATGATGAGTTTGGTGTGCAAAAAATTATCCCAGACACCACATTCATCAAGAAATGGAGCCACAAAATTGAAGCAGTCATCATAACACATGGCCATGAAGATCACATCGGTGCGTTGCCTTGGGTAATCCCAGCACTCGATTCAACCACACCGATCTACGCATCATCATTTACGATGGAGTTAATAAAGAAGCGTTTGAAGGAGTTTGGCATTTTCCTCTCATCTAGGCTAAAAACATTTAGAGTTAAAAAGAGATTTCAAGCTGGGCCGTTTGAAGTGGAACCTATTCGTGTAACTCACTCAATTCCTGACTGTTGCGGCTTAGTGCTTCGCTGTGATGATGGAATAATTTTCCATACTGGTGACTGGAAGATTGACGAATCACCAGTGGATGGGAAAATTTTTGACCGACAAGCATTGGAGGAGCTCTCTAAAGAAGGTGTTACTCTTATGATGAGCGACTCAACAAATGTCTTATCCCCTGGAAGATCTATCAGCGAATCTGTTGTTGCTGGTTCGCTGCTGCGACATGTTTCAGAAGCTAAAGGAAGAGTAATTACAACACAATTTGCTTCAAACATACATCGAATTGGGAGCATCAAAGCTGCTGCAGACTTAACTGGTCGAAAGCTGGTATTTGTTGGAATGTCACTCAGGACATACCTTGAGGCTGCTTTCAAGGATGGAAAAGCACCGCTGGATCCATCAACCTTGGTCAAGGCAGAGGACATGGATGCCTATGCTCCTAAAGATCTTTTAGTCGTTACTACAGGTTCACAAGGAGAGCCACGTGCTGCATTAAATCTTGCATCTTATGGGGGAAGCCATGCTCTTAAGCTAACCAAAGAGGACGTCCTTCTTTATTCAGCTAAGGTTATTCCTGGAAATGAGACGCGAGTAATGAAGATGATGAATCGCCTCACTGATCTTGGCCCAAAAATTGAGGAAGTTCTTCAGATTGTCAAACCACAGCATTTCTTGCCTGTTCATGGAGAGCTCCTGTTTCTAAAAGAACATGAATTACTTGGGCGATCAACTGGCATCAGGCATACTACTGTAATTAAAAACGGAGAGATGCTTGGTGTGTCACATCTAAGAAATAGAAGGGTGTTGTCCAATGGATTCGTTTCATTAGGGAAGCAGGATTTTCAGCTCATGTATAGCGATGGTGATAAGGCTTTTGGGACATCCACTGACCTCTGTGTTGATGAGAGACTAAGAATTGCATCTGACGGTATTATTTTTGTCAGCATGGAGATATTCCGACCTCATAGGGAACATGCTTCAGCACAGTCAGGTTTGAAAGGCAAATTTAAAATTACAACAAGATGTCTATGGCTTGATAATGGAAGATTGTTAGATGCACTATACAAAGCTGCGCATGCTGCATTGTCAAGCTGTCCTGTAAACTGTCCACTTAGTCACATGGAGAGGATGGTATCCGAAATATTGAGGAAAATGGTAAGGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCCACGGAGAACACCACTGTTGGTTTCGCAGAACACCTTGAGTCTAAATCATCAGGAAATATTGGACCTTCCTCAGCTACTAGCCATCTGAGCAGGAGTCCAGCTCAGAGTCTTGAAGGCAGTCACAAAACACGCCCAGACGACTCAGATATGGAGACTGAAGAGACCCTTCCTGAGGTAGAGAGAACGTCACCTGATGATGCAACCACAAGCTCCAACGGTGAAGTATTCTTCTCTTCAGATTTGCATAAGCCTAAAACGCTAGAGCACTTTTGGGAGTCATTCAAATCCCCTACAGCAGTAAAAATTGCAAGAATTGTCAATGGTCAAGGGAACAGACCAAAGGTTAGCAAGATCGGCATAATGGGTAAGGACTCCACCCAGTCAGCTCTTGCTCCGGTTTCATCTCCAAAAAAGAACAAGTGGAAACCTGAAGAAATTAAGAGCTTAATACAGATGCGTGGCGAGATGAATGAGAGGTTTCAGTCTGTGAAAGGAAGAATGGTTCTGTGGGAAGAGATATCTGGTAGCTTGTTGAACCAGGGAATAAGTCGTACACCAGCACAGTGCAAATCTCTATGGACATCGTTGGTTCAGAAATACGAGGAGAGCAAGAAGGATGAGGAGAGCAAGAAGACGTGGCCATATTTCTCGTCCATGGATCGGATCCTGTCATGCGAAGGGGAGATGGCGGCGAAGTGA
Protein Sequence:
- >462919962|Eragrostis_tef|Trihelix|462919962
NPKLEKDPAEGRSRRLRYLLRFPPSLLFTLHLSPPPPSHLLSTAAAMVALASVSSLCPCGLGRRLSATAPASTSASVSATISCCAVATPSSGKGPHVSRTPRGRLRRTEGATKSLEDSVKRKMEQFYEGVDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDEFGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDSTTPIYASSFTMELIKKRLKEFGIFLSSRLKTFRVKKRFQAGPFEVEPIRVTHSIPDCCGLVLRCDDGIIFHTGDWKIDESPVDGKIFDRQALEELSKEGVTLMMSDSTNVLSPGRSISESVVAGSLLRHVSEAKGRVITTQFASNIHRIGSIKAAADLTGRKLVFVGMSLRTYLEAAFKDGKAPLDPSTLVKAEDMDAYAPKDLLVVTTGSQGEPRAALNLASYGGSHALKLTKEDVLLYSAKVIPGNETRVMKMMNRLTDLGPKIEEVLQIVKPQHFLPVHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFVSLGKQDFQLMYSDGDKAFGTSTDLCVDERLRIASDGIIFVSMEIFRPHREHASAQSGLKGKFKITTRCLWLDNGRLLDALYKAAHAALSSCPVNCPLSHMERMVSEILRKMVRKYSGKRPDVIAVATENTTVGFAEHLESKSSGNIGPSSATSHLSRSPAQSLEGSHKTRPDDSDMETEETLPEVERTSPDDATTSSNGEVFFSSDLHKPKTLEHFWESFKSPTAVKIARIVNGQGNRPKVSKIGIMGKDSTQSALAPVSSPKKNKWKPEEIKSLIQMRGEMNERFQSVKGRMVLWEEISGSLLNQGISRTPAQCKSLWTSLVQKYEESKKDEESKKTWPYFSSMDRILSCEGEMAAK