Information report for 102611
Gene Details
Functional Annotation
- Refseq: XP_024535802.1 — uncharacterized protein LOC9629060
- Swissprot: Q84W56 — RNJ_ARATH; Ribonuclease J
- TrEMBL: D8RVM9 — D8RVM9_SELML; Uncharacterized protein (Fragment)
- STRING: EFJ23804 — (Selaginella moellendorffii)
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009942 — Biological Process — longitudinal axis specification
- GO:0060918 — Biological Process — auxin transport
- GO:0009507 — Cellular Component — chloroplast
Family Introduction
- GT factors constitute a plant-specific transcription factor family with a DNA-binding domain that binds GT elements. The DNA-binding domain of GT factor, rich in basic and acidic amino acids and proline and glutamine residues, features a typical trihelix (helix-loop-helix-loop-helix) structure that determines the specific binding of GT elements; thus GT factors are also called trihelix transcription factors. GT elements are highly degenerate cis-elements with A/T-rich core sequences (Villain et al. 1996; Wang et al. 2004). Interaction between GT factors and GT elements has been implicated in the complex transcriptional regulation of many plant genes.
Literature and News
Homologs
- Beta vulgaris: Bv5_110480_qpat.t1
- Gossypium hirsutum: Gh_D03G1080
- Musa acuminata: GSMUA_Achr9P29430_001
- Panicum virgatum: Pavir.1KG323800.1.p
- Ricinus communis: 30147.m014528
- Sesamum indicum: XP_011073024.1, XP_011073026.1
- Setaria italica: Seita.1G185600.1.p
- Setaria viridis: Sevir.1G189500.1.p
Sequences
CDS Sequence:
- >102611|Selaginella_moellendorffii|Trihelix|102611
ATGGCACCTGGAAGGTCAGATGTTAAGTCCCCGGAGCACGGTACCCCAATAGTAGAAGAAGATTTCGTCGTTGACGGGGTGGATCGTTTGGGAATTGGAAGCTCCAGCAATGAGGAGGAGGATGGTGTGCAGGTCACGTGCTTCACGGACGTGGTAGATGATGTTACACTCCATTTTCAGATCATTCGTCTTCATAAACAGATTTATGCATGGATTGGTTGCAACTCTGCCAAATTCGGACACTTGTATGCTGCTGCACCGACCCGACCTAACAATACAGTGAGTGTTACTAACATCCTTGGAGGAGCTTCTGATAATACCGGATCTGGCATTGTCCGTAGATTAGCCATAAAGATTGATAAGGCATATCCACGTGATTTCATGCAACGAGGAAGGGTGAGGGTGTTACTGAAAAAGGATGATGGAACTTTGTTTAATCCAGCCATCTCTTCAAGGAAACAGCTGATGCTCTCCGTGGCAGAGTTAGTTCCCAGACACCCTGGGAGAACCAAAAAACAGGAGCCTGCTGCATCTACTTCGGGTGCTGGACCTGCAAAATCCGGGAAAGCATTTAGTGAAGGCATGGTTGATGATGGATATGTGGATGTTGTCAACATTGATATATCCTCGGTGGCGATCGAAGCCATCATGAGAAAGAAGTGCAGTAATCGTCCGCAGCTGAAATATATTAAAATGGATGTCCGAGATATGAGTGCATTTCAAACGGTTTCCTTTGATGCTGTTGTTGATAAAGCTGGTTCTTTGTTCCTGTTTGACCGAAAAGTTCTTCGATATTTTCGTAAAGATGGTCACAGTTGGAGGAAGAAAAAAGACGGAAAGACCGTCAAAGAGGCTCACGAAAAGTTGAAGGCTGGCAGTGTGGATGTTCTTCATTGCTACTATGCCCATGGAGAGGATAATAAGAATTTTCAGAGACGAAGTTATTGGATGCTTGATGAGGAGTTAGACAATATTGTTCTCGTGCACTACAGAGAAGTGAAAGAGGGTAGCAAATTATGTGTCTCGCATTTGCTTAATGCAGATCCAGGGTCACAGCTTGGAAGTTCTCAAACTAGTTCATCACCTTGCTTGGAACAAACAAACTCACCTATTCTAACAGTTCAAATGTCTAATGCATCAAGTCCGAATGCAGTTGACTGGAGTGAACAATCATTGTCTTCTGAATTTGAGGATAGGGATTATGGAGAAGATCCAGGGATCTCTTCTCTTGCTCGACATGGTTCTGTCTCTTATAATGCTTCATTGCTTGCAGATTCAGCTACAGCCTCGTCGGAGGCTCGCCTGATCCCCTGCGGCCTCGTCGGAGGCTTGCTGATCTCTATTAGGTCCAGTCAAGTCTCGATCTGGCCTGAGATTGTGTCGTCGGAGTTTTGTACAGTGTCGTCGGATTGTGGATATCTGGAGTTATCAAGGGATCAGATTGATCCAGCGTCAGTTGGAGGTGGCTTTCATCACGAGGCTGGCTCATCAATGTGGGCTGATGTACATGGCTCAAGTGGGAACCTACATAGCATGCATGACCAGAAATTCCACTTCCAACAACTGAATGCGGCTGATTTCTTAACTCATAAACTGATAGATGCCAAGTTGGATGCAGATAACACAACTCAAGATGTTGTGAACGGTGGAAATATGTTGATTCCTTATGGCCAGATAGTAGCCCAGGAAAAAATACCTTATGCTGCCAAAGTTGATTCTCAAGTGGGTAGAGCGAGTAATGATGAAGCCGGAGAGCTGAAGAAACTTGACAGCTTTGGGAAATGGATGGATAAAAATATTGGTGGAGATTGTGATGATTCTTTGATGGCTTCTGACTCTTGTAACTATTGGAATACGCTTGATACAGAAAATGACAAGGAAGTATCAAGTCTATCACGTCATATGCAGTTGAATATTGATGAGCTGGGCCCCTCTGTGATTTTGCAAGAGCAGCTATTTACTATCTGTGATTTTGCTCCTGATTGGGCCTACACCGGAGTTGAAACGAAGGTTTTAATTACTGGTACATTTCTGGGGGACACGAAACATTCTGGTAGTTTTAAATGGTGCTGTATGTTTGGTGAAATTGAAGTATCTGCTGAAGTTCTGACTGACAATGTTATGCGATGTCAAGTTCCTTTTCATGCTCCTGGGCGTGTCCCCTTATATATAACATGCAGTAATAGGTTGGCCTGTAGTGAGGTGCGGGAGTTTGAATATCTTGAAAGATCCCCAGAAGCTGTATCTTCTGCAATTGTTAAAACTGCACCAAAAGATGAAGTGTTGTTTCAAGTACGACTAACCAAAATGCTAGATGTTGGCTCTGAGAGGAAGTGGTTGGATTGCTCTGTTGTTGGATGCGATAAATGTAAGCTGAAGAAGAATATCAATTCATTGAAAACTAAAAGCAAAATTCAGTCAGAAATGATTGAGAATGACATCGTGTTCTTTGAAGGATATAATGTAAGCCTTGCAGATTCGTTGATTCAGAATTTGCTGAAGGGAAAACTTTATGAATGGCTAATCTGTAAAGTACATGAAGGAGGTAAAGGACCACATATTTTGGACGAAGAAGGCCAAGGGGTTATTCACCTGGCAGCTGCTCTTGGTTTTGAGTGGGCTATGTGCCCCATAGTAGCTTCCAGTGTCAGTCCCAATTTCAGAGATGTACGAGGAAGGACAGCACTTCACTGGGCATCATACTATGGGAGAGAGGAAACAGTCGTTGCACTGGTTAGACTGGGTGCAGCAGCGGGTGCTGTAGATGACCCTACCTCAGCATCACCTGGAGGACAAACTGCTGCTGATTTAGCATCAAGTAGAGGCCACAAAGGGATTGCCGGATATTTGGCAGAAGCAGATCTAACCAGTCATCTTTCTTCTTTGACGCTCGGAGAAAATTCTATGGAAAGTGCTGCTGCTACTATCGCAGCAGAAAAGGCAACGGAGACTGCAGCCCAAAATAATGTTTTATCTACAGGAATGGCCGTTAATGAGGAACATTCCTTGAGTGGGTCTCTTGCTGCTGTAAGAAAATCTTCTCATGCAGCTGCCCTAATACAAGCTGCTTTTAGAGCTCGTTCATTCCGTCATAGGCAACAGACTAAGAGCAACAATGAGATTTCTGAAACTTCACTTGACCTTGTTACACTTGGGTTACTAAACAAGGTTCAGAAGGTGAGTCATTTTGAGGATTATTTGCATTCTGCTGCTATAAGGATCCAGCAAAAGTATCGTGGCTGGAAGGGTAGGAGAGAATTTTTAAAGATACGGAAACGTATTGTGAAAATTCAGGCTCATGTGAGAGGACATCAAGTCCGGAAGCAATACAAAAAGGTTGTCTGGTCTGTTAGCATTGTTGAAAAGGCAATATTGCGTTGGAGGCGGAAAAGACATGGATTGCGAGGATTTCGGATGGAAAAAACTAATGAGAATGGAGTACCTGAGACTGAGAAGTGTGATGAGTACGAATTTTTGAGAATTGGCAGGAGACAAAAAATTGCAGGAGTTGAGAAAGCTCTGGCAAGGGTCCAATCCATGGTTCGCCACCCAGAGGCGCGTGATCAATACATGAGGCTGGTTAAAAAATATGAGGATTGTAAGTTGAGCAATGAAGCAACGAGTGCATCAGGGCTTGTCCCGGGTACTGAAGAAAGATGA CAAAGCCGATATGGTATTCTAGAAGGAGCCGGGCACAGCAAAGACGACGCGGTCCAGCGAACAATGCGAAAGTTTTACGAGGGAAGGAATGGACCGCCTCTTCGCATTCTTCCGATTGGAGGCCTCGGAGAGATTGGAATGAACTGCATGCTCGTCGGGCACTATGATCGCTATATCATGATCGATGCTGGACTTATGTTTCCCGATTATGAGGATTTCGGGGTGGTGAAAGTTCTTCCCGACACGACGTTCATTTCTCGCTGGAAGCACAAGATTGAAGCTGTGATTATTACGCATGGGCACGAGGATCACATCGGTGCATTGCCTTGGGTTATTCCCGCTCTTGATCCTCAGACACGCATTTACTCTACAAGTTTCACACTCGAGCTTATCAAAAGGAGATTGAAAGACTACAACTTCCCATTTGAGCATCGATGCCATACATTTACGATGCGAAATCCCTTTCAAGCGGGTCCTTTCAAGGCCGAAGCTATTCGTGTGACTCACTCGATACCGGATTGTTGTGGCTTGATACTTCGTTGTCAAGATGGAACCATCTTTCATTCCGGAGACTGGAAGATCGATGAAAATCCGCTTGATGGTAAGATATTTGATCGGAATACACTTGAGGAACTAGGCAAGGAAGGAGTCACTCTGATGATGAGCGACTCTACGAACGTCTTGTCGCCAGGGCGGACAATAAGCGAGACAGATGTTCGAAAGTCGTTGATGCAGTATGTCACGGAGGCAAAATCTCGGGTTATATCAACACAATTTGCTTCCAACATTCATCGACTTGGGAGTATGAAAGCTGCTGCAGATGCTTCTGGACGTAAACTAGTTTTCATTGGAACTGCCTTAAAAACGTATATTGATGCAGCATGGAAGGATGGACAGGCACCATTTGATCCTTCGATTCTGGTAAAAGCTGAAGATATGGGCGCGTATTCACCAAAAGATCTTCTTATAGTCACGACAGGATCTCAGGGCGAGACACGGTCGGCTCTAAATCTTGCATCATTTGGAAGCAGCCGCAGTTTAAAGTTGTCCAAAGATGACGTTATCCTGTATTCGGCAAAGATGATACCTGGCAATGAAACGAGAGTGATGAAGATGCTGAACAGGATATCTGAAACTGGTCCGCATATCATCACTGGAAAAGACAAGCTTCTACATACTTCCGGACATGCCTATCGCGATGAATTGCAAGAACTGCTAAGACTCATTCGGCCGCAGCATTTTCTGCCGGTCCATGGTGAGTATACTTTCTTAAAAGAGCACGAGCAGCTTGGCAGGGCTTCCGGTATTCAGCACACAAAAGTTATAAGAAATGGTGAGATGCTCGGAGTCTCGCCTTTACGGAACAGACGGGTCCTCTCTAGTGGGTTTGCTGCCCTTGGAAAGGAGGATTTACAGCTGATGTATAATGATGGGGAAAAAGCATTTGGAACTGCATCAGATCTTCGCGTGGACGAAAGAAAACACATAGCCTTCGATGGAATTATAATAGTAAGGTACGAAGTTTACGATGATAATTATGCATCTCGGCTAGATGGTTCGGAATATGGACTACGCGCTCGTATCAGGATCACCACTCGGTGTCTTTGGCTGGATCAGGGAAAACTTACGGAAGCACTTCACAGGGCAGCTAATGCAGCCGTTGGAAGCTGCAAGCAAGATGCTGATCTTCAGACTGTGGAGCGAACAGTTGCCACAGTGCTCCGGAAGGTAGCACAAAAGTACAACAACAAAAGGCCAGAGGTCGTCGCTATAGCTACAGAGAGAGCCGTTGCTCCAAAAGACAAGCTCATCCAGAAGAGGCTGGTCGTGGATGCTGCGGCTCAACTTAAGGTGCTGGTGAGGACAAATGCTGTAAATACCAGAGTCTACGAGAAAGAGAAGAGGCAGCAGCAGCACGCGGAAAAGGACAACGAGCGACGGCTGTCGGTGGAGGAAACAGAAACAGAAGAAGAACGAGTGAGAAAGGCAATCGCTGAGAAGGTGTTGAGAGAAATGAAAAACGCGAGGACCCAAAAGGCGGCTAGGATAGAAGAAGAGAAGAAGCTACAGCTCGTAGTAACAGTTGACGATGCTGATAAAACACCAGCACCAGCACCAGCACCAGCCACCAAAGTGGAAGAAAGAAAACAAGAGAAGAACGAAGTACTTTCCATAGCCGAGAAGGAAGCAGACTTGGCAGCCGCAGGGAAAAGCAGATGGAAACCGGAGGCCACCCAGGTGTTGATCCGGCTACGAACAGGCATGGACGACAAATTCAGAGAAGCTAAACTCAAGACCCCTCTCTGGAAGGAGATAGCATCCAAGCTTGCTGAGCATGGCTACGAGCACACCCACGGCCAATGCAAGGCAATGTGGTCGACTCTGGTGAAACGCTACAGGAACATAATCGAGGATGATGGAAGCTCCAACAAAAACTGGCCATTCTTCGATGGAATGCACGCGTATCTGAGCGATGATCCAGACTCGTAA
Protein Sequence:
- >102611|Selaginella_moellendorffii|Trihelix|102611
QSRYGILEGAGHSKDDAVQRTMRKFYEGRNGPPLRILPIGGLGEIGMNCMLVGHYDRYIMIDAGLMFPDYEDFGVVKVLPDTTFISRWKHKIEAVIITHGHEDHIGALPWVIPALDPQTRIYSTSFTLELIKRRLKDYNFPFEHRCHTFTMRNPFQAGPFKAEAIRVTHSIPDCCGLILRCQDGTIFHSGDWKIDENPLDGKIFDRNTLEELGKEGVTLMMSDSTNVLSPGRTISETDVRKSLMQYVTEAKSRVISTQFASNIHRLGSMKAAADASGRKLVFIGTALKTYIDAAWKDGQAPFDPSILVKAEDMGAYSPKDLLIVTTGSQGETRSALNLASFGSSRSLKLSKDDVILYSAKMIPGNETRVMKMLNRISETGPHIITGKDKLLHTSGHAYRDELQELLRLIRPQHFLPVHGEYTFLKEHEQLGRASGIQHTKVIRNGEMLGVSPLRNRRVLSSGFAALGKEDLQLMYNDGEKAFGTASDLRVDERKHIAFDGIIIVRYEVYDDNYASRLDGSEYGLRARIRITTRCLWLDQGKLTEALHRAANAAVGSCKQDADLQTVERTVATVLRKVAQKYNNKRPEVVAIATERAVAPKDKLIQKRLVVDAAAQLKVLVRTNAVNTRVYEKEKRQQQHAEKDNERRLSVEETETEEERVRKAIAEKVLREMKNARTQKAARIEEEKKLQLVVTVDDADKTPAPAPAPATKVEERKQEKNEVLSIAEKEADLAAAGKSRWKPEATQVLIRLRTGMDDKFREAKLKTPLWKEIASKLAEHGYEHTHGQCKAMWSTLVKRYRNIIEDDGSSNKNWPFFDGMHAYLSDDPDS*