Gene Details:

• Gene ID: Pavir.7KG122300.1.p
• Gene Family: S1Fa-like Family
• Description: S1Fa-like Family protein
• Species: Panicum virgatum
• Source: S1Fa-like family gene from PlantTFDB

Protein Features:

• Pfam:  PF03094
• Pfam:  PF04689
• InterPro:  IPR004326    IPR006779

Annotation Proteins:

• Refseq:  XP_015633609.1  — DNA-binding protein S1FA2
• Swissprot:  Q7XLX6  — S1FA2_ORYSJ; DNA-binding protein S1FA2
• TrEMBL:  A0A0D3FVJ5  — A0A0D3FVJ5_9ORYZ; Uncharacterized protein
• TrEMBL:  A0A0D9ZKE5  — A0A0D9ZKE5_9ORYZ; Uncharacterized protein
• TrEMBL:  A0A0E0H0D2  — A0A0E0H0D2_ORYNI; Uncharacterized protein
• TrEMBL:  A0A0E0P8S3  — A0A0E0P8S3_ORYRU; Uncharacterized protein
• STRING:  Pavir.Ga01929.1.p  — (Panicum virgatum)

Gene Ontology:

• GO:0006355  — Biological Process — regulation of transcription, DNA-templated
• GO:0005634  — Cellular Component — nucleus
• GO:0003677  — Molecular Function — DNA binding

Family Introduction:

• A cDNA encoding a specific binding activity for the tissue-specific negative cis-element S1F binding site of spinach rps1 was isolated from a spinach cDNA expression library. This cDNA of 0.7 kb encodes an unusual small peptide of only 70 amino acids, with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. This protein, named S1Fa, is highly conserved between dicotyledonous and monocotyledonous plants and may represent a novel class of DNA binding proteins. The corresponding mRNA is accumulated more in roots and in etiolated seedlings than in green leaves. This expression pattern is correlated with the tissue-specific function of the S1F binding site which represses the rps1 promoter preferentially in roots and in etiolated plants.

Literature:

• Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter.   DOI:  10.1093/nar/23.7.1165 ;  PMID:  7739894

Sequences: