Information report for Lus10023345
Gene Details
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Functional Annotation
- STRING: Lus10023345 — (Linum usitatissimum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A cDNA encoding a specific binding activity for the tissue-specific negative cis-element S1F binding site of spinach rps1 was isolated from a spinach cDNA expression library. This cDNA of 0.7 kb encodes an unusual small peptide of only 70 amino acids, with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. This protein, named S1Fa, is highly conserved between dicotyledonous and monocotyledonous plants and may represent a novel class of DNA binding proteins. The corresponding mRNA is accumulated more in roots and in etiolated seedlings than in green leaves. This expression pattern is correlated with the tissue-specific function of the S1F binding site which represses the rps1 promoter preferentially in roots and in etiolated plants.
Literature and News
Sequences
CDS Sequence:
- >Lus10023345|Linum_usitatissimum|S1Fa-like|Lus10023345
ATGGAGGAAAACGGCGCCGGCGAGGCAGAAGTGCACGGCGTAAAACACCTAGTTTCCTTCTACTCCAACCAAGTATGGAACCGCCTCACCGCTTTCTTTCCTTCCGACTCCAATTTTCTCGGCAGAATCGCAAGCATACGCCGCCAGACAGTTCGTCGTCACGATCTCTTCCTCCCACTTCCTCTATCTTCGCACATTCTCGACTCCTACTTGATGAAACCAGGATCATCTCGGGTGTATGATGTTCTTCAAGATATACTGGAGAGAAGTTACAATAATCTTCACAGTATTCAGAAGAATCTGTTGTTTTGGGAATGTAGAGCTGAGGGATCAGAACGAGAAAAGTTGTACTTCATGTTGTTGGAAAGAGGACCGAGGGCTTTCATTGATGGAACAGTTCAGTTAGTGCGTGAGACCTTGAAGGATGGTTTCTCCACACAGCAACTAGCGCTATCTGCATCAGCTTTCATAAATGAGAGATTGGTTGTCTTGAGAACCTTGAGATGTGCCATTGCTGCTTTCTTGGCTGAGGTTTACAGGGAAGTTGATAAACGTGGAAAAGACTTGACAGAAGATCCAGATAAGGCATTTCCCTCGCTGTTATTCACTATTGACAATTTGTTTTCAACTTTAGAGGCATCCATTGGCCATCTACATGCCATGCGCGAGGCTGGTTCCTCTGTGGATGGAAGCTATTCACTCCCTCTACTGTTTGAGAAACTTCCAGAGGTTAATCAAGATGGTTCTGAGTGGACTGATTGTGAGATAACAGATGCCATCGGTGTGGTGTACAAAAATTTAGAGAAGCTGGACTCTTATTTGTCACTTGTGGTTGTCAAACATCAAAAGCCAAGGAAGTTAACTCAACACTGGATCCGTTATACCTGTGGTGCCATTGGCTTCTCGGTTTGTTCTATTTGGGTTCTTCGGCATAGTAGATTAATGGGAAGTTCTGATATTGACAATTGGATTCATGAAGCAAGGGATTCGATAGCTAGCTTCTATGAGGACCATGTTGAACAACCGATTTTGTCCATCAGAGATGAACTTTTCGATACATTCAGGAAGAGACATAAAGGAGTGATGGAAATCGAAGAAGTGCAGTTGACAGCTGGTTCTCTGCACAGGATGTTGTTGGCTTTCAGTGAGCAGACTCAGGGGGGAAGTTTCCCTGAGAATGCATCAGATCAGAAAATGCTAGAATTAGTGATGGGCAGGTATGAAAAAGAACTTGAACATCCAATTCATAATCTGGTAAAGGGAGAGCTAGCTCGTGCTTTGCTCATCCAGGTTCAAAAGCTAAAGTTAGACATCGAAACGGCTATGCTCGAGCTGGATCAGATCCTCAAGGCAAATGAGATCAACTTTGCCATTCTAGCAGCCTTACCAGCATTTGCACTCTCAGTTGTTCTGCTTATGTTATTAAGAGCCTGGATTAAACAGGACACTAGAGCTGAAGGAAGGGGGAGAATTGCTAGGCGTCACAGGAGGTTGCTTTTGGCGGAGGTGGAGAAAAGTATTATGCAGTACCAAATTTACCTGGATCACGGGCTGGGGACCGAGTCACAAAGCATGTTCGGTATGGTGTTGTACAGTCTGAATCGCTTGTGCCTTGCAGTCGAGAGGCACGCGAAAGCAACTGGTGAATGGCGATTGTTGAGACAGGACATTATGGAACTAGGGAAACCAGGCTTGAAAACCGAGTACAAGCTGCGAGTGACCTTGCGGATGGAGCGTGCTTACGAATGCTTGCTTCCTTCAACCACACGCATCTTCCAGCTGCGCTCCGGTGAACGTAGCTGCCAGTTCAGCTTTCCACTCCAGCACTCTGCAACGATGGAAGGGCGGTCATCTCCGCCGGCTAGCAAATCGGCAAAGTTCGCCGTCTATCAGAATCCCTCCTTGACTGCTGCCCTAGCCGCTTCCAGCCTTCAGCCGTCTAAATCCACGTTTCTGTATATAGTGTTGCTCTCCGTTGCCTCTGCTCTCGCTCTTTTCTCCATTGTTTCCAGGGAAAATGGGTTCATTGAAATGGTCGAAGTCAGCTTTTTCTCACGGCGGGCAGCTTATATATTTGCTAAGGTAGTGGAGGGTGTGGTTGGTGTTCTCTTCGTTGGATGTCTGTTTGGCCTTCTTAGAGTCATCTCCTGGAAAAGGGTTGGAAATGTTGCTAGTGTGCCAATGATAACTTCACCTGAAACAAAGGACCTTCCAAAACTGACCAGCCGTCAACTGGGGTTTTTAGGTGTAAGGCCAAAAGTTGAAGCAATTCCAGTGGAGTATTCAAAAAAACCTCCAAAGTCTAAACCCACACCGGCGTCAGATTTGCTTGTTCCAATTCACCAACAAACGACTGGTTCTAATCTTAGGTCTCGTGTCACATCTGATAAATCAAGTCTTGGTAGTGGAAATAAGATGTCCTCTTTCGGCAGCCCATCCAAATCACAATCTTCTCCATCATCTATGTATCTTGTCCCACGGATCAGTTCACCACTACCGTCTGGACAATCTTCATCAGGCATGGATTCAGCTGTTTCAACTCCTTGGTCAAGTAAGAGGGCCTTCTCTGCGAAAGAGATAGTAACGGAAGAGGAACTTGAGAAGTTCTTGGCAGATGTTGATGCCAAATTTACTGAATCAGCAGGGAAACACACAACTCCACCCCCAACTGTTAGAGGTTTTGGCATACTGAGTCCTGGTAATGTTCCAAGTCCAACCAATACATCTGGAACTACAAGGAGTACACCCTTGAGACCAGTGAGGATGTCTCCTGGTTCCCAGAAGTTTGCCACTCCACCGAAGAAAGGAGAAGGAGAGCTCCCTCCGCCAATGTCCATGGAAGAGGCCATTGAAGCTTTCAAGCATTTGGGTATCTATCCACAAATAGAGCAGTGGCGTGATCGCCTCAGACAGTGGTTTTCTTCAGTTCTCCTTGGCCTTTTAATTAACAAAATAGAAACCAGTCATATTCAGGTTATGCAAACAGCTGCGGAACTTGGGATTGCAATAACAGTTAATCAAGTTGGAAACTCGGCAACCAGTGACACACCTGCTACTCTCTCTTCTATTGATGGGAAAGAATGGCAATCGGCATTCACGTTTGATGAAGATGGTCGTCTTCATCAACTTCGTGCTACTCTAGTTCATGCCATTGATGCTTCTGCACCCAAGTTTAATCAGTTCAATAAACAGCAATCTCCACAGCCAAATCCTATGGCACCTGTTATGCAGAAATGTTTGGATGCCATAACAGAGCATCAAAAACTACGAGCATTAATGAAAGGAGATTGGGGTAAAGGTTTGCTACCTTATAGTAATGTCCGGGAAGATCACATGGTACAAAGAATTCGAGAACTTGCAGAAGGAACCTGCGTGAAGAATTTCGAGTATATCAGAACTGGAGAGGCGTATGATACAAAGAACAAGAAACAGACTCTGGATCTTCCGACTGATTCTCACTTACTATTGTATTTGTTTTGCGCCTTCCTCGAACACCCGAAGTGGATGCTCCATGTAGATCCAACTTCCCATGCAGGAGCTCAGTCTAGCAAAAACCCCTTGTTTTTGGGTGTCTTGCCGCCCAAGGAAAGGTTTCCGGAAAAGTACGTCGCTGTTGTTTCTGCTGTTCCTTCCACACTTCATCCTGGATCTTGCATACTTGTCATGGGGAAACAAAGCCCTCCAGTCTTCGCCTTGTATTGGGATAAGATGCAACAGTTCTCTCTCCAGGGAAGAACAGCTTTGTGGGATTCAATCATACTCATGTGCCATAGAATCAAGTTTGGCTATGGAAGTGTAGTCCGAGGAATGCATCTTGGTTCATCAGCTTTGAACATTCTTCCTGAGAAAGCCACGTTGCAGCTTGTAATAGCAGAAAAGCTCCATGAAAACAGCAGAATTTCTGGTGACAAACCAGAGGGAAAAAGCTCCATAGATCTTGAGGAGGATGCTATCAAATCAAAACAAGGAAGCCATTGTTGTTTCTATCCCATCATGGACCTCGACGAGTTCGTCAGCTGGACGCCCGAAAAGCCTAAGAAAACTTATTTCATCCGCAATGGACGTATGGGGAGGGACAAGAATGGGAAGATGATCATCAGGGAAAATGAAGACGATGTGCAGAGCAATAGCAGCAACAAACAAGGTATGGTCGTGTTCGGAATAGTGGTCGGATTACTGCTTCTCTTCGTGGTCGGCAACTATCTTCTCTACAGTTACGCTACTCGGCAATCGAAGAATAGCAAGAAGATGATGATGGTTAAGAAAGCAGTCTCTAAGAAGAAGATGAAGCGTGAAAGGATCAAACAAGGCATCTTTGTCCCTGGAGATTAA
Protein Sequence:
- >Lus10023345|Linum_usitatissimum|S1Fa-like|Lus10023345
MEENGAGEAEVHGVKHLVSFYSNQVWNRLTAFFPSDSNFLGRIASIRRQTVRRHDLFLPLPLSSHILDSYLMKPGSSRVYDVLQDILERSYNNLHSIQKNLLFWECRAEGSEREKLYFMLLERGPRAFIDGTVQLVRETLKDGFSTQQLALSASAFINERLVVLRTLRCAIAAFLAEVYREVDKRGKDLTEDPDKAFPSLLFTIDNLFSTLEASIGHLHAMREAGSSVDGSYSLPLLFEKLPEVNQDGSEWTDCEITDAIGVVYKNLEKLDSYLSLVVVKHQKPRKLTQHWIRYTCGAIGFSVCSIWVLRHSRLMGSSDIDNWIHEARDSIASFYEDHVEQPILSIRDELFDTFRKRHKGVMEIEEVQLTAGSLHRMLLAFSEQTQGGSFPENASDQKMLELVMGRYEKELEHPIHNLVKGELARALLIQVQKLKLDIETAMLELDQILKANEINFAILAALPAFALSVVLLMLLRAWIKQDTRAEGRGRIARRHRRLLLAEVEKSIMQYQIYLDHGLGTESQSMFGMVLYSLNRLCLAVERHAKATGEWRLLRQDIMELGKPGLKTEYKLRVTLRMERAYECLLPSTTRIFQLRSGERSCQFSFPLQHSATMEGRSSPPASKSAKFAVYQNPSLTAALAASSLQPSKSTFLYIVLLSVASALALFSIVSRENGFIEMVEVSFFSRRAAYIFAKVVEGVVGVLFVGCLFGLLRVISWKRVGNVASVPMITSPETKDLPKLTSRQLGFLGVRPKVEAIPVEYSKKPPKSKPTPASDLLVPIHQQTTGSNLRSRVTSDKSSLGSGNKMSSFGSPSKSQSSPSSMYLVPRISSPLPSGQSSSGMDSAVSTPWSSKRAFSAKEIVTEEELEKFLADVDAKFTESAGKHTTPPPTVRGFGILSPGNVPSPTNTSGTTRSTPLRPVRMSPGSQKFATPPKKGEGELPPPMSMEEAIEAFKHLGIYPQIEQWRDRLRQWFSSVLLGLLINKIETSHIQVMQTAAELGIAITVNQVGNSATSDTPATLSSIDGKEWQSAFTFDEDGRLHQLRATLVHAIDASAPKFNQFNKQQSPQPNPMAPVMQKCLDAITEHQKLRALMKGDWGKGLLPYSNVREDHMVQRIRELAEGTCVKNFEYIRTGEAYDTKNKKQTLDLPTDSHLLLYLFCAFLEHPKWMLHVDPTSHAGAQSSKNPLFLGVLPPKERFPEKYVAVVSAVPSTLHPGSCILVMGKQSPPVFALYWDKMQQFSLQGRTALWDSIILMCHRIKFGYGSVVRGMHLGSSALNILPEKATLQLVIAEKLHENSRISGDKPEGKSSIDLEEDAIKSKQGSHCCFYPIMDLDEFVSWTPEKPKKTYFIRNGRMGRDKNGKMIIRENEDDVQSNSSNKQGMVVFGIVVGLLLLFVVGNYLLYSYATRQSKNSKKMMMVKKAVSKKKMKRERIKQGIFVPGD*