Gene Details:
- Gene ID: Gorai.001G003200.1
- Gene Name: B456_001G003200, LOC105771190
- Gene Family: S1Fa-like Family
- Description: S1Fa-like Family protein
- Species: Gossypium raimondii
- Source: S1Fa-like family gene from PlantTFDB
Protein Features:
Annotation Proteins:
- Refseq: XP_012448373.1 — PREDICTED: probable inactive receptor kinase At2g26730
- Swissprot: O48788 — Y2267_ARATH; Probable inactive receptor kinase At2g26730
- TrEMBL: A0A0D2N431 — A0A0D2N431_GOSRA; Uncharacterized protein
- STRING: Gorai.001G003200.1 — (Gossypium raimondii)
Gene Ontology:
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006468 — Biological Process — protein phosphorylation
- GO:0005634 — Cellular Component — nucleus
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0003677 — Molecular Function — DNA binding
- GO:0004672 — Molecular Function — protein kinase activity
- GO:0005524 — Molecular Function — ATP binding
Family Introduction:
- A cDNA encoding a specific binding activity for the tissue-specific negative cis-element S1F binding site of spinach rps1 was isolated from a spinach cDNA expression library. This cDNA of 0.7 kb encodes an unusual small peptide of only 70 amino acids, with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. This protein, named S1Fa, is highly conserved between dicotyledonous and monocotyledonous plants and may represent a novel class of DNA binding proteins. The corresponding mRNA is accumulated more in roots and in etiolated seedlings than in green leaves. This expression pattern is correlated with the tissue-specific function of the S1F binding site which represses the rps1 promoter preferentially in roots and in etiolated plants.
Literature:
- Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter. DOI: 10.1093/nar/23.7.1165 ; PMID: 7739894
Sequences:
CDS Sequence:
- >Gorai.001G003200.1|Gossypium_raimondii|S1Fa-like|Gorai.001G003200.1
ATGGTGTTAAGTTTCAGCTCTGTAATTTTAGTTTCAGTTTTAATACTGAGTTATGGAGTCAACTCAGAACCGGTTCAAGACAAGCAAGCTTTACTTACGTTCCTTTCAATGGTCAAACATGAGAACCGGGTTCAATGGAACTCATCAACTTCAGCTTGTGATTGGGTCGGTGTCGAATGTGATGCTACACGGTCTTTTGTTTTCACTCTCCGGTTACCTGGTGTGGGACTCGTCGGTTCCATTCCACCTAAAACGATCGGTCTTTTGAACCGACTCCGGGTCTTAAGTTTAAGGGCGAACCGTTTATCCGGTACCGTTCCGGCCGATTTTTCCAATTTGACTCTGTTGCGGGGTCTTTATTTGCAAGAGAATCAGTTCACCGGTTCGTTTCCGTCTAGCTTGACTCGTTTAACTCGTTTGGTACGGCTTGATCTTTCTTCTAACAATTTCACCGGTCCAATTCCTGTCGGAGTCAACAATTTGGCTCATCTGACTGGTCTTTTCTTGCAAAACAACACGTTTTCCGGTTCTCTTCCGGCTATCAACTCTGACGGTTTAGATGATTTCGATGTTTCTAATAACAACCTTACCGGTTCAATTCCCTATACCTTATCTAAATTCCCGGCATCTTCATTCGCCGGAAATATCGGACTTTGTGGGGGTCCACTCCGGGCATGTAACCCAACTTACCGTAAAAGTTCCGGGCTTTCCACCGGCGCCATTGTTGCCATCGTCGTTGGGTCTGTACTCGTTGCATTATTGTTCCTACTATGCCTCATTCTTTTTCTTTGTAAACAGCAAAGACGGCCGGATAGAAAGGAGAAGCCAGTTACGGAAGAGACACGGGCAGCTCCGCCCGCGGAAGCGGGGACTTCGTCTTCTAAAGATGACGTGACCGGTGGGTCAATTGAAAGGGAAAAGAATAAGCTGGTGTTTTTTGAAAGTGGGGTTTACAGCTTCGACTTGGAGGACTTGTTGAGGGCCTCAGCTGAAGTGTTGGGAAAAGGCAGCGTAGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGGACGGCGGTGGTAGTGAAACGGTTGAAAGACGTGGCGGCTAGTAAAAGGGAATTCGAAATGCAAATGGAAAAGTTGGGTAAAATCAAGCATGAAAAAGTGGTTCCTTTGAGGGCATTTTACTACTCCAAAGATGAAAAGCTGCTTGTTTACGAGTTCATGCCTAACGGTAGCTTGTCTGCTCTGCTTCACGGTAGTAGAGGCTCAGGCCATACACCGCTGGATTGGGACAATCGGATTAAGATAGCATTAAGCACCGCTAAGGGTCTATCATACCTCCATCTTTCTCAGGTCGCTCACGGCAACATCAAGTCCTCCAATATCCTTCTTGGACCAAACCGCGAAGCTTGCATCTCCGACTACGGTCTCAACCCGCTCTTTGGCAACACCACTCCGCCTAGTCGTGTTACGGGCTACCGAGCACCTGAAGTGCTTGAAACACGTAATGTTACGTTCAAGTCTGATGTTTATAGTTTTGGTGTTTTGTTGCTAGAGGTGTTAACAGGTAAATCACCTAGCCAAGCATCATTAGGGGAAGAAGGGATTGATCTTCCTCGTTGGGTCCAATCGGTGGTTCGTGAGGAATGGACAGCTGAGGTTTTCGACGCGGAGTTGATGAGATATCACAATATTGAGGAGGAAATGGTGCAACTGTTACAGATTGCAATGACTTGTGTATCGGTGGTTCCTGATCAAAGACCTGCCATGGTAGATGTGGTACGCATGATTGAAGATCTGAATAGAGCTGAAATCGATGACGGATTACCACAGTCATCTGATGCTAATACTCCGCCTACCGAATCAAGGACTCCACCTACATCCGCCACACCTTAA
Protein Sequence:
- >Gorai.001G003200.1|Gossypium_raimondii|S1Fa-like|Gorai.001G003200.1
MVLSFSSVILVSVLILSYGVNSEPVQDKQALLTFLSMVKHENRVQWNSSTSACDWVGVECDATRSFVFTLRLPGVGLVGSIPPKTIGLLNRLRVLSLRANRLSGTVPADFSNLTLLRGLYLQENQFTGSFPSSLTRLTRLVRLDLSSNNFTGPIPVGVNNLAHLTGLFLQNNTFSGSLPAINSDGLDDFDVSNNNLTGSIPYTLSKFPASSFAGNIGLCGGPLRACNPTYRKSSGLSTGAIVAIVVGSVLVALLFLLCLILFLCKQQRRPDRKEKPVTEETRAAPPAEAGTSSSKDDVTGGSIEREKNKLVFFESGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTAVVVKRLKDVAASKREFEMQMEKLGKIKHEKVVPLRAFYYSKDEKLLVYEFMPNGSLSALLHGSRGSGHTPLDWDNRIKIALSTAKGLSYLHLSQVAHGNIKSSNILLGPNREACISDYGLNPLFGNTTPPSRVTGYRAPEVLETRNVTFKSDVYSFGVLLLEVLTGKSPSQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMTCVSVVPDQRPAMVDVVRMIEDLNRAEIDDGLPQSSDANTPPTESRTPPTSATP*