Information report for mrna12898.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004309145.1 — PREDICTED: uncharacterized protein LOC101293942 isoform X2
- TrEMBL: A0A2P6SNY7 — A0A2P6SNY7_ROSCH; Putative transcription factor Nin-like family
- STRING: XP_004309145.1 — (Fragaria vesca)
- GO:0009793 — Biological Process — embryo development ending in seed dormancy
- GO:0005634 — Cellular Component — nucleus
Family Introduction
- Nodule inception initially relies on cell competence in a narrow infection zone located just behind the growing root tip. Older nodules then regulate the number of nodules on a root system by suppressing the development of nodule primordia. Nin (for nodule inception) is required for the formation of infection threads and the initiation of primordia. NIN protein has regional similarity to transcription factors, and the predicted DNA-binding/dimerization domain identifies and typifies a consensus motif conserved in plant proteins with a function in nitrogen-controlled development.
- The nitrogen regulation of nodule organogenesis and Chlamydomonas gametogenesis together with the conserved domain embedding the RWP-RK motif of NIN and Mid indicate that this domain is involved in the regulation of genes controlled by nitrogen status. Because the conserved domain was found only in proteins from algae and higher plants, this class of regulator proteins probably evolved after the common ancestor of algae and plants diverged from the other eukaryotes.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA03g19970
- Daucus carota: DCAR_020332
- Gossypium arboreum: Cotton_A_32941_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D03G1095, Gh_A03G0443
- Malus domestica: MDP0000819497
- Nicotiana benthamiana: Niben101Scf04083g01026.1
- Nicotiana tabacum: XP_016448453.1, XP_016471868.1
- Petunia inflata: Peinf101Scf03679g03027.1
- Prunus mume: XP_008234884.2
- Prunus persica: Prupe.2G308900.1.p
- Pyrus bretschneideri: Pbr013603.1, Pbr010789.1, Pbr031538.1
- Solanum lycopersicum: Solyc03g083040.1.1
- Solanum melongena: Sme2.5_00965.1_g00005.1
- Solanum tuberosum: PGSC0003DMP400032296
- Ziziphus jujuba: XP_015865812.1, XP_015865811.1
Sequences
CDS Sequence:
- >mrna12898.1-v1.0-hybrid|Fragaria_vesca|Nin-like|mrna12898.1-v1.0-hybrid
ATGGAGTACAATACCCAACAACTTGTTGATCCAGAGATTGAAGAAAACCCACTTGAATGTGACTACTTAGGGTACCACTATCAAGACCCATTGCCAAACAGTACTACTTCCATGTTTGAGGCTCCACAGATTGATCATGGATTCAATTCAGTAGCTTTGCCATTACCTGAAGATAACAACCAAATTCCCCACATGGGTTTTCAAGGACTTGAAGATTTTAGCCTCCGGGACTACACAGCTTTGGACATTGCTAATACTTTTTCATCATCACCTCTCTGTGATTTTAATAACGTACTTGATGGAAAGACTCATACAACAGTATTGGAGTCTTTTGGTGAGTCTAGCAATGACCCAAGTGACATGATGATCGGAAGTTCTGGTTTTTCATCGACTCAATGTGATTCAGTGTTGTTTGATGAAAAGCCCATTTCAACAATGGTGGATTCTTTTGATTATTTGATCAACAACTCAACTAATTTGGGTTACCATGCTATGATTGAAAGCTCTGGTTTTTCATCATCTCTCTGTGATTCTCTGGTCTTCGATGATATGCTTCTTAGAGAAATGGTGGAGTCTTTGAACAACAATGTCCCAAGTGATGTTGGTCAGCATGAAGTTTCAATGATGGTTGAAAGTTCTCGGTTTTCATCGACTCAATGTGATTCTGTTGTGTTTGATGAAAAGCCCATTTCAACAATGGTGGATTCTTTTGATTATTTGATCAACAACTCAACTAATTTGGGTCACCATGCTATGATTGAAAGCTCTGGTTTTTCATCATCTCTCTGTGATTCTTTGGTCTTTGATGAAATGCTTCTTAGAGAAATAGTGGAATCCTTGAACAACAATGTCCCAAGTGATGTTGGTCAGCATGAAGTTTCAATGATGGTTGGAAGTTCTGGTTTTTCATCGACTCAATGTGATTCTGTTGTGTTCGATGAAAAGCCCATTTCAACAATCGTAGAGTCCTTTGGCAACTCGAGCAATGTCCCGAGTGTTTTTGATCACCATGAAGCTTCCATGGTGACTGAAAGTTCTGCTGCTTATTCATCCTCTCATTGTAATGCTCTGGTGCTATATGAAACACCCCTTTCAACAATCGTGGATTCTTTCGACTACTCTGATATGCCTACACCTGATTTGAGCGATGAAGAAGTTTCAGTGAAGATTGAAAGTGGGTATCCTAGTTGGGGCACTTCAGACACTAGTTGTTTGAGAGGGACAAGTAATAGAGGGAGATGTAGTACACAGATGAAGATCAAGTCTGATGCTTTGGAATTGGAGGGTATAAAGCAGTACTTTAACCTCCCAATAACAAAAGCAGCCAAGGAATTGAAGGTGGGAGTGACATTGCTGAAGAGGAGATGCAGGGAGCTCAACATCATGAGGTGGCCTCATAGAAAGATCAAGAGCTTGAATTCTCTTATTGAAACTATGAAGAGAATGGGTTTGAGAAATGAGGTAAAAATGTTGGAGGAGAACAAAAGGCTTCTAGAGCTAGTGCCAAATATGGAGCTTACAAAGAGAACCAAAAGGCTGAGGCAGTCTATTTTCAAGGCCAACTACAACAAGAAGAAGATGTCTTTGTCTATATCCCTTGGATGA
Protein Sequence:
- >mrna12898.1-v1.0-hybrid|Fragaria_vesca|Nin-like|mrna12898.1-v1.0-hybrid
MEYNTQQLVDPEIEENPLECDYLGYHYQDPLPNSTTSMFEAPQIDHGFNSVALPLPEDNNQIPHMGFQGLEDFSLRDYTALDIANTFSSSPLCDFNNVLDGKTHTTVLESFGESSNDPSDMMIGSSGFSSTQCDSVLFDEKPISTMVDSFDYLINNSTNLGYHAMIESSGFSSSLCDSLVFDDMLLREMVESLNNNVPSDVGQHEVSMMVESSRFSSTQCDSVVFDEKPISTMVDSFDYLINNSTNLGHHAMIESSGFSSSLCDSLVFDEMLLREIVESLNNNVPSDVGQHEVSMMVGSSGFSSTQCDSVVFDEKPISTIVESFGNSSNVPSVFDHHEASMVTESSAAYSSSHCNALVLYETPLSTIVDSFDYSDMPTPDLSDEEVSVKIESGYPSWGTSDTSCLRGTSNRGRCSTQMKIKSDALELEGIKQYFNLPITKAAKELKVGVTLLKRRCRELNIMRWPHRKIKSLNSLIETMKRMGLRNEVKMLEENKRLLELVPNMELTKRTKRLRQSIFKANYNKKKMSLSISLG*