Information report for mrna23240.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004308809.1 — PREDICTED: uncharacterized protein LOC101303658 isoform X2
- TrEMBL: A0A2P6SJN2 — A0A2P6SJN2_ROSCH; Putative aminotransferase class IV
- STRING: XP_004308809.1 — (Fragaria vesca)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003824 — Molecular Function — catalytic activity
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g030670m, orange1.1g030714m, orange1.1g030547m
- Cucumis sativus: Cucsa.165970.1
- Daucus carota: DCAR_019137
- Malus domestica: MDP0000216586
- Manihot esculenta: Manes.10G041500.1.p
- Populus trichocarpa: Potri.008G044800.5, Potri.008G044800.3, Potri.008G044800.2, Potri.008G044800.1
- Prunus mume: XP_008233379.1, XP_008233378.1
- Prunus persica: Prupe.2G219500.4.p, Prupe.2G219500.3.p, Prupe.2G219500.1.p
- Pyrus bretschneideri: Pbr023945.1, Pbr022077.1
- Ricinus communis: 29923.m000817
- Vitis vinifera: GSVIVT01016347001
Sequences
CDS Sequence:
- >mrna23240.1-v1.0-hybrid|Fragaria_vesca|NF-YB|mrna23240.1-v1.0-hybrid
ATGACCACTACTCCTCTCAGGCTCTTACTCACCAACGGCGTCGTTTCCGACCCTTCCACCACTCCTCCTGTCACCACCTTCCTCGAGACCCACCCAGGGGCTTACACCACGTCTCGCACTCACAACAACGCCTCATTGGTGTTGTTCTGGGAGAGGCACTTGAAACGGCTCACGGACTCCGTCAGGATTCTATACAATGCCAATCCTCAGCTTCTTTTCGGACCCAACAAGACTTTGGTTCCATTACCATCACTGGCGGCTGATTCTCTTTTGCTTCGGTCAAGGGTTGGTGATCTTGTTAATGATTCGATGAACAAAGTGCTGCCGGTTGCTTTGGAGGGGAGGAGTGACGGGGAGGAGCTGTCGATTACTACTTTGGTGAGTGGCAATTTGGGGAGATTGGGTGAGAGTGGGGACTTGGAGCTTGACAGAAATGGTGAGGCTCTTGATGTGAGCATTTACGTTGGGATTTATGTGCCGCCTGTGTTTGGTGTCAGTAGAAACGGTGCGCAGTTGGCTGTGGTGGGTCGTGGGAGAGATGTCGCTGCTGCTAAGTACTCAGATTGGGTAAGGATAAGGAAGCCTTTGGAGAGGTTGAGGCCACCCTCAGGGACCGAGCTCTTGTTGTCCAACGATGGTGATAGGATTCTTGAAGGCAGCGTGTCAAACTTCTTTGTGGTCTGCCGAAAGGAAGACAATGAAGCTAAGGAGCAAACTATTGACTGTTTTGAAGTACAGACAGCTCCTATTAGTGATGGTGTCCTACCAGGAATTATACGCCAACTAGTCATTGAAGTATGCTTGAGCAAGGGAATCCCTTTTCGAGAAGTTGCACCACTGTGGTCAGAGCATGAATTTTGGGAAGAGGCATTCATTACAAGTAGCTTAAGACTTATGCAGCATGCGGAGACTGTTCGTGCTCCAAGTTCATGGGAATCACTGCATGGCAACTCTTGGAAGGATATATCATGGAAGGAGAAGCAGTTTAAGAAGGGTCCTGGGATGATTACTACAATAATTCAGAAGGAGATAATGGAAAAGGCAGTTTCAGAAGGATACTCTTTGAACCATGTTGGATTAAGTGATGACCTTAGTTTAGAATACAACAATGTTATTGGTTTTGAATTCATCAACACATCTGGATGGATGCCAGATGTTCAGATTCCCACTTCTCGCCGTGTTACCAGATGGATACCAGTAACAGTTCTCCACTTCTCGCCGTGCTCCTTTTTGAGCCGAGTAAAATTCTTGTCTTCAAAGCCGGGCGTTTCCAAATCTTCCTTGTCGTCAGATTTCTCAACCCAAAACGCGCGAAATACAAACCCACCGCCCTCCCTCCTCCTCCCTTCTCTCTCTTCACAACTCCAGGGGATTAGTGTTTTGTTTTTGATTGTGATAATGGCGGAGGTACCGACGAGCCCGCCGGGCGGTAACGACAGCGGCGGCGAGCAAAGCCCGCAGAACGGGAGCAGCAGCAGCGTGAGGGAGCAGGACAGGTACCTCCCAATCGCGAACATCAGCCGGATTATGAAGAAGGCGCTGCCGCAGAACGGCAAGATCGCCAAGGACGCCAAGGACACTGTCCAGGAATGCGTCTCTGAATTCATCAGCTTCGTCACCAGCGAGGCTAGCGATAAGTGTCAGAAGGAGAAGAGGAAGACGATTAATGGTGATGATTTGCTGTGGGCGATGGCTACGTTAGGGTTTGAGGACTATATTGAGCCGCTCAGGATTTACTTGGCTAGGTACAGGGAGGGTGATGCAAAGGGTTCTGCGAGGGGTGGAGAAGGATCTGCTAAAGGGAATCCTGTTGGAGCTATGCCTGGGCAAAATTCACAGTTTGTTCATCAGCCACCTTTGAACTATGTCAATAGTCAAGCACAGCATTTGGGCTCATTCTATGCAAAGCTATGA
Protein Sequence:
- >mrna23240.1-v1.0-hybrid|Fragaria_vesca|NF-YB|mrna23240.1-v1.0-hybrid
MTTTPLRLLLTNGVVSDPSTTPPVTTFLETHPGAYTTSRTHNNASLVLFWERHLKRLTDSVRILYNANPQLLFGPNKTLVPLPSLAADSLLLRSRVGDLVNDSMNKVLPVALEGRSDGEELSITTLVSGNLGRLGESGDLELDRNGEALDVSIYVGIYVPPVFGVSRNGAQLAVVGRGRDVAAAKYSDWVRIRKPLERLRPPSGTELLLSNDGDRILEGSVSNFFVVCRKEDNEAKEQTIDCFEVQTAPISDGVLPGIIRQLVIEVCLSKGIPFREVAPLWSEHEFWEEAFITSSLRLMQHAETVRAPSSWESLHGNSWKDISWKEKQFKKGPGMITTIIQKEIMEKAVSEGYSLNHVGLSDDLSLEYNNVIGFEFINTSGWMPDVQIPTSRRVTRWIPVTVLHFSPCSFLSRVKFLSSKPGVSKSSLSSDFSTQNARNTNPPPSLLLPSLSSQLQGISVLFLIVIMAEVPTSPPGGNDSGGEQSPQNGSSSSVREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLRIYLARYREGDAKGSARGGEGSAKGNPVGAMPGQNSQFVHQPPLNYVNSQAQHLGSFYAKL*