Information report for Gh_D11G3286
Gene Details
|
|
Functional Annotation
- Refseq: XP_012435198.1 — PREDICTED: uncharacterized protein LOC105761812 isoform X1
- Refseq: XP_016679853.1 — PREDICTED: uncharacterized protein LOC107898815 isoform X1
- TrEMBL: A0A0D2R5I4 — A0A0D2R5I4_GOSRA; Uncharacterized protein
- TrEMBL: A0A1U8ITW3 — A0A1U8ITW3_GOSHI; uncharacterized protein LOC107898815 isoform X1
- STRING: Gorai.007G374500.1 — (Gossypium raimondii)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy017211
- Cajanus cajan: C.cajan_09796
- Cicer arietinum: XP_004493942.1
- Citrus sinensis: orange1.1g030647m, orange1.1g030627m
- Cucumis melo: MELO3C009309P4
- Cucumis sativus: Cucsa.307210.3
- Glycine max: Glyma.19G178500.1.p, Glyma.03G177700.1.p
- Medicago truncatula: Medtr7g100650.1, Medtr7g061270.1
- Populus trichocarpa: Potri.016G085000.3, Potri.016G085000.2
- Ziziphus jujuba: XP_015899594.1, XP_015899593.1
Sequences
CDS Sequence:
- >Gh_D11G3286|Gossypium_hirsutum|NF-YB|Gh_D11G3286
ATGGCGGAAGCACTGGCACCGGCGAGTCCCGGCGGAGGAAGCCACGAGAGTGGCGAGCAGAGCCCGAAATCGAATGTGCGAGAACAGGATCGGTTTCTACCTATAGCTAATATCAGCCGTATTATGAAGAAGGCTCTTCCTGCTAACGGCAAGATCGCTAAAGATGCTAAGGAGACTGTACAAGAGTGCGTCTCTGAGTTTATCAGCTTCATCACTAGCGAAGCTAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAATGGGGATGATCTGCTCTGGGCTATGGCGACTTTAGGGTTTGAGGATTACATTGATCCGCTTAGGATTTACCTTTCCCGATACAGAGAGGGTGATGCTAAGGGCTCGGCTAAAGGTGGAGATGCGTCTGCTAAGAAGGATGTCCAACCAGGCCCAAATGGCCAGCTTGTTCATCAAGGTTCATTCTCACAAGGTGTTAGTTATGGGAATTCTCAAGGTCAAGTTCAGTTTCCAGGCATCCATCTGATATGGAGGACCGACATCATGGATGGGTTGAGCCTCATCGACGTTACGTCCGAAGACGATTGCCTCATCGATTCGCCTCTTCGCGATGATACAACCCCTCAATTCTCAGGCTCTTTTGATGAACATGGAAAGTTAGAGGGAGACGAGACAAGAGGAAAGGGAAGATATAATTTACGCAAAAGTTTGACTTGGGATAGTGCTTTCTTTAGTAGTGCAGCTTTTCTTGAGCCAGAGGAGTGCACTAACACGCTGGAAAGCAGTGAAAATGGTGAAATACATACATTGCCTGGGATTCAAGAGGATGTGGACAACTATTCTGATTCTTCAACAATGTTACATGGTGAAGCTTCAACACTGCGAAATTCTTTTGTTAAAAAGGAACTGGAAACAAAAGATCCTAAGAATGTGTCATCTTCGAAGAAGTTAGAGTATACTAATCATGACAAGGTGAAGCAGAAGGCTGCTCGTAAGAAGGCAAGCTTAGCTGTAACGGTCCCTGTGAAAACAATGAAGCAGGCTCCTGCCCGACCACAGACTTCACAGTCTTCTAGAAGTGAAATATCAACAACTTCATCTCTTCATAAACCACCAAAGGGACTAAGCATAGTTGGTCCAATTTCAGCAACACATACAAGAAGGGCTTCTTTGGGTGGTCTGAATTGCAAAATAGAAAAAGATACAAAAAGTGTGACTGGTAAAGGAACCACAGTATTAAAGACTCCACGTAGGCCTGCTTCGTCCACTGGTGCAACCAAAATTGCAGCCGAAGGTAAAAGTCGAGTAGGGCGGTCACAGGTGTCAACTTTTTTGAAGTCTCCTACCAATCTCAACCAGAGTATGTCTGTGGCTAGCTCTTACGGTGAATGGTCCTCGGACACATCATTGTCACAATCAACTTCGAATAAGAGGTCTAGTATCGTACGAGCCGGCCTTGGTTCAGGCTCTCACAAGGTAACTGTTCGGAATTCTGATCCTGAACAAGTTTTGGATGCAAGTACTGGTTCTGAGGTTACCGGCTCACTTGATGAAAGTACCGGGGTTCATTCGGCTTCGATAAAACCATCCGGCCTTCGACCGCCATCACCGAAACTTGGCTATTCTAACGGGGTAAGATTACCCAGACACACTCGAACTCGGAGTATGGATTCTTACCCTAGTATGTCACTTATTCTGCCTCAAATCGGACCGAAAAGCAATACTCCGAGTGCTTACTCGAACAAGATGCCGACTAGAACTACTACTACAACAAAGGAAAGATTACCTGGACACACTCGAACTCAGAGTATGGATTCTTACCCTATTATGCCTAAAATCGGACCGAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTAGAACTACTACAACAAAGGAAAGATTACCCGGACACACTCGAACTCGGAGTATGGATTCTTACCCCATTATGCCTAAAATCGGACAGAGAAGCAATAGTCCGAGCGCTTACTCGAACACAATACCCGCTAGAACTACTACAACAAAGGTACTAAATGCTTCGAGAAACCCGAAAATAAAAACTGGCATAATATATCCTAAACATCAAAATAAATCCTCCCCGAAACCCAGAAAGGGAAGTTACTCAAAGGCTCAAGGCATTGGTTCTGCAGAAAAAATCGCAAGTCCAGATGTCCCAAAGTTGGTTGTAAAACTAGGAGGCAAAGGAGCTCAAATTAAAGATACCAAGATCGTTCCTCTCGGAGGTACCTGA
Protein Sequence:
- >Gh_D11G3286|Gossypium_hirsutum|NF-YB|Gh_D11G3286
MAEALAPASPGGGSHESGEQSPKSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLRIYLSRYREGDAKGSAKGGDASAKKDVQPGPNGQLVHQGSFSQGVSYGNSQGQVQFPGIHLIWRTDIMDGLSLIDVTSEDDCLIDSPLRDDTTPQFSGSFDEHGKLEGDETRGKGRYNLRKSLTWDSAFFSSAAFLEPEECTNTLESSENGEIHTLPGIQEDVDNYSDSSTMLHGEASTLRNSFVKKELETKDPKNVSSSKKLEYTNHDKVKQKAARKKASLAVTVPVKTMKQAPARPQTSQSSRSEISTTSSLHKPPKGLSIVGPISATHTRRASLGGLNCKIEKDTKSVTGKGTTVLKTPRRPASSTGATKIAAEGKSRVGRSQVSTFLKSPTNLNQSMSVASSYGEWSSDTSLSQSTSNKRSSIVRAGLGSGSHKVTVRNSDPEQVLDASTGSEVTGSLDESTGVHSASIKPSGLRPPSPKLGYSNGVRLPRHTRTRSMDSYPSMSLILPQIGPKSNTPSAYSNKMPTRTTTTTKERLPGHTRTQSMDSYPIMPKIGPRSNSPSAYSNKIPARTTTTKERLPGHTRTRSMDSYPIMPKIGQRSNSPSAYSNTIPARTTTTKVLNASRNPKIKTGIIYPKHQNKSSPKPRKGSYSKAQGIGSAEKIASPDVPKLVVKLGGKGAQIKDTKIVPLGGT