Information report for Genemark1.3949_g
Gene Details
|
|
Functional Annotation
- Refseq: XP_005648182.1 — hypothetical protein COCSUDRAFT_63166
- TrEMBL: I0YZ19 — I0YZ19_COCSC; Uncharacterized protein
- STRING: XP_005648182.1 — (Coccomyxa subellipsoidea)
- GO:0005634 — Cellular Component — nucleus
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi4g38527.1.p
- Cajanus cajan: C.cajan_21724
- Citrus sinensis: orange1.1g032293m, orange1.1g032845m
- Glycine max: Glyma.12G089400.1.p
- Lactuca sativa: Lsa009142
- Lotus japonicus: Lj3g3v2994480.1
- Musa acuminata: GSMUA_Achr8P07750_001
- Salvia miltiorrhiza: SMil_00026274-RA_Salv
Sequences
CDS Sequence:
- >Genemark1.3949_g|Coccomyxa_subellipsoidea_C-169|NF-YB|Genemark1.3949_g
ATGACCACAGCGGCACTCAAGACTGTCGCGGAGGAGAAGGACACAGACCTGCCCCGCGGACTCGTGAAGAAGATTGTCAAGAACAAAGTCAATCAGACTTTGGCCTCGTCTGGATCCGGAGAACCCTTGAAGGACATCCAGATCAACAAGGACGCCTTGCTTGCTTTCTCTGAGAGCGCCAAGGTATTCGTCAGCTACCTCACATCAGCTGCAAACGATATCTGCAAGGAAGCCAAACGCCAAACTATCAGCGCCGAGGATGTCTTCACGGCCCTTCAAGATCTAGACTTTGGAGAGCTTGTGCCCCCCACAAAAGACGCCCTTGAAGCTTTCCGCCAGGAGAGCAAAGAAAAGACCAAGCGCAAGGCAGAGCAGGTCAAGAAGAGGAAGGCAGAGGAGGCAGTGCGGCACCACCCATACGAGGGCGCTGACCAGGTCGTTGGAGAGGGTCCCCAGGAAGGCTTGCCTGCTGACAGTGGCAACCCTGCAGAGCCAGTAGAGCCCTACGCACAGCAGCCGCAGGCCCAGGCTCCCTACATTGCCAAGGCCCACCCTGCCTTCTCAGAGCCCCAGAAGCTGCCCCAGCCAACCGCCACCCAATACCAGCAGGCCGCCGCTCTCCCGGTGCAGCAGCAGCAGGGAGGAAGCTACCAGCCGGCCTTTAACCAGGCCAACCCCTTTGGACCGGCCTTCGCACAGGCGTCCCAGTTTGCAGCAGCGCTCGCGCAGGCGCAGGCAGCACAGGCCGCGCAAGCTCAGGCCCAGGCACACGCCCAAGCCCAGGCCAGCCAGCTGCTGCCCAGCCACTTCCCGGCTGCACAGCTGCAGAACCCCACCTTCGCTCAGCTTGCATCTTCCCAGGCACGCTGCGCCTGCCTCTGCTTCACGGTGCCGGGGCATCTGAACCAGGCCAACTACGCGCAATTCGCGGCCGTGATCGCGCAGCAGGCGGCCAGGCAGCGCCAGGCGCAGGAGGCGCAGCTCGCCCAGCAACAGGGGAACCCACAGGCACATTTCTTCCAACAGGCGCCCGCCCAGCAGCTGTTTCAACAAACACAGGTGCAGCAACCACAGCCACAGCAGCCGCACCAGGAGGCTGCCACCGAAGCAACGCAGCCACTCACAGAGACAGCGCCGACGGCCGAGAGCGGCCTCCACAACTGCATAAGCTGGAGGCCAGGCAGCTCCTGGGTGGCTCTGCAGTGTGATACAGCCAAGCTAGTGGTGCTGGACATTGGCAACCCAGACAAGAGGGCCTCTGAGGTGCAGCGGCTGTGCTGGAAGAAGGTGTTGGAAATCATTGCATGTGCCTGGAGTGAGAATGGAGAGTATCTCCTCACGGCGCATGCTGCTACAAACGGTGCTCTTTTTATGTACAAGGATGTGTGCATCAGCATGGCTTACGGCGATCCAGCCCATCTGAGGATAGCCGTCGCTGGCAGCCCTGGCGTGATCCTGTACAGTGCATCCATTTCCAAGGAGAGTGGGCGGTGGGAGGCGCGGCAGGAGGGACGCCTGTGTCACCTCTGGCCCGTGTGCGCGGTGCGGTTCGGCCCTGGCGGCCGGCACTTGGCGGCGGCCGGTTTGGGCGGCCAGCTGTGCATCTGGGACATGTCCTCAGCGGACGGCAGCGCCACACTAGAGCTGCAGGTGCAAGTGCCGGCAGAGCGAGTCACGAGCATGGCCTTCTCCCCAAATGGCAGCGCACTTGCCGTGGCCTGCTGGGGCGGCGCACTCTTCCTCTACCTGCAGCAGGACAGCCCCCTGGACGCCTCCCTGCCAACAGCCTTCCACGCTGCAGCGCAGCAGGAACCTGGTGAAGGCGCATCTGCAGGGGGGATTAGGCATGATGCATCAAGGGAGGCGCAGGAAGGGACGGCGGCGCTCACCGGTGCAGCGCCTGGCTTGAGGGTGGGGGTTGGAGGCGCACCTGCAGGGGGGTTTACCCAAGATGGAATAGTGGAGGGGCAAAAAGGGGCTGATGCGCTTGAGGTAGCTGGTGGGAAGGATGAGGGGGCTGGAGGCGCACCTGCAGGGGAAATTACATATGATGGAACAGCGGAGGGGCAGGAAGGGGCTGACGAGCTTGAGGAAGCTGGTGGGAAGGAGGTGGGGGCTGAAGGGATCGCTGCGGCGTATGAGTCGCGGCTGGCGGCGATCGACCACGGCGCGGACGGCCGCGGCGGCTGGCGGCCGGCGCCGGCCTCTCTCCCGGGGCAGCCCGTGAAGCCGGACGCCACCGGGCCGACGCTGCTCGAGTGGCTGGGGGATGACAGTATCCTGCTGACTCATCCGTCGACGGCGCTCGTGCTCGTCAAGGTGGAGAAGGGTGGCCTGGTGCCCATGAGATTCCGGCAGACTGCTGGGAAGGAGCAGCATTCAAGCCCCAAGGCGAGTGGCAGCGCTGATGCATCACAATTGGAGGCATCAGGGAGGGCTAGTGACGCCAGCTCTGACGAGGAAACTGGTTTGGAGGAGCAGAGCAATGCTCTGAAGGGACTGGCAGTGATGCATGTGGCGGGGCAGCATGTTGTGGTGTGCTATGATAGAACGCGCTCACTGCACGTATTCTCTCAGAATGTTAATAGGCTGGCAGGTGTGCCTGAGACTGTGTGA
Protein Sequence:
- >Genemark1.3949_g|Coccomyxa_subellipsoidea_C-169|NF-YB|Genemark1.3949_g
MTTAALKTVAEEKDTDLPRGLVKKIVKNKVNQTLASSGSGEPLKDIQINKDALLAFSESAKVFVSYLTSAANDICKEAKRQTISAEDVFTALQDLDFGELVPPTKDALEAFRQESKEKTKRKAEQVKKRKAEEAVRHHPYEGADQVVGEGPQEGLPADSGNPAEPVEPYAQQPQAQAPYIAKAHPAFSEPQKLPQPTATQYQQAAALPVQQQQGGSYQPAFNQANPFGPAFAQASQFAAALAQAQAAQAAQAQAQAHAQAQASQLLPSHFPAAQLQNPTFAQLASSQARCACLCFTVPGHLNQANYAQFAAVIAQQAARQRQAQEAQLAQQQGNPQAHFFQQAPAQQLFQQTQVQQPQPQQPHQEAATEATQPLTETAPTAESGLHNCISWRPGSSWVALQCDTAKLVVLDIGNPDKRASEVQRLCWKKVLEIIACAWSENGEYLLTAHAATNGALFMYKDVCISMAYGDPAHLRIAVAGSPGVILYSASISKESGRWEARQEGRLCHLWPVCAVRFGPGGRHLAAAGLGGQLCIWDMSSADGSATLELQVQVPAERVTSMAFSPNGSALAVACWGGALFLYLQQDSPLDASLPTAFHAAAQQEPGEGASAGGIRHDASREAQEGTAALTGAAPGLRVGVGGAPAGGFTQDGIVEGQKGADALEVAGGKDEGAGGAPAGEITYDGTAEGQEGADELEEAGGKEVGAEGIAAAYESRLAAIDHGADGRGGWRPAPASLPGQPVKPDATGPTLLEWLGDDSILLTHPSTALVLVKVEKGGLVPMRFRQTAGKEQHSSPKASGSADASQLEASGRASDASSDEETGLEEQSNALKGLAVMHVAGQHVVVCYDRTRSLHVFSQNVNRLAGVPETV*