Information report for Tp57577_TGAC_v2_mRNA1894
Gene Details
|
|
Functional Annotation
- Refseq: XP_013445060.1 — nuclear transcription factor Y subunit A-4
- Refseq: XP_024627642.1 — nuclear transcription factor Y subunit A-4
- TrEMBL: A0A2Z6NJU2 — A0A2Z6NJU2_TRISU; Uncharacterized protein
- STRING: XP_004510988.1 — (Cicer arietinum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0016602 — Cellular Component — CCAAT-binding factor complex
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- NF-YA proteins are characterized by the presence of Gln(Q)- and Ser/Thr(S/T)-rich NH2 termini, a subunit interaction domain (NF-YB/NF-YC interaction), and a DNA-binding domain (Olesen and Guarente, 1990; Maity and de Crombrugghe, 1992; Xing et al., 1993, 1994). The protein interaction and DNA binding domains are well conserved between plant and other eukaryote lineages.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy022042
- Cajanus cajan: C.cajan_22041
- Cicer arietinum: XP_004510989.1
- Glycine max: Glyma.12G236800.5.p, Glyma.12G236800.2.p, Glyma.12G236800.1.p, Glyma.12G236800, Glyma.12G236800.3.p, Glyma.12G236800.4.p, Glyma.13G202300.2.p, Glyma.13G202300.1.p
- Gossypium arboreum: Cotton_A_12983_BGI-A2_v1.0
- Medicago truncatula: Medtr8g037270.2, Medtr8g037270.1
- Ziziphus jujuba: XP_015881709.1, XP_015881708.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA1894|Trifolium_pratense|NF-YA|Tp57577_TGAC_v2_mRNA1894
ATGGGGGTTGAAGTTTGTATGAATAAATTGTGTAAGGAAAGTTCTATTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCAAAACTCTGCAACAAATGCGGACTTGCCTATGAGAATTCAGTTTTCTGCGATCAATTTCACCGTCTTGAAGCCGGTTGGAGGGAATGCAACAATTGCAAGAAGCTTATCCACTGCGGATGTATAGTATCAAAGTCTTTGTTCGAGTACCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACTGGAAATGCTAATAGGTTTGCTCATATAACTAAAAACAATGCAAATGATCGATATGCTGAACATACTGATGGTGGACTCTCGGTGGAACGTGTTGGTAAAGGAAACCTTATGCAGTTACGGAAAACTGCTGAAGCTGGTGAAACAAGCTTTTGGCCACAAGCTCAAAGAGATGGTGTGTTTTCGAGTATTGGTTCAAAAAGCGAAGAAATTAATTGTCGATTCAACAAAACTGATACAGGATTTTTAAATGTGATGAAACATTCTAGTCATTTATCGGCACTTACTACATCAGAAAATAATAGACCAACATGGGAGACCAAAAGTAGAGATGAATCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTGTCCTGCCTTCTGCCAAAGAGATTGTAGAAGGTAAACTTGAGGGTAAAGCATCTTCTATTTCTCAACAAGGGCACAATTCTTACCCTATATTGGCTAAACAACCGAAGACCGGTGTTACATTGAATCTTGAAACAAATAAAGGCATGATTTCTCTTCCACGCATTGGTCGACCACCTGCTGATGTGAAAGGGAAAAATCAGTTACTTTCTCGATACTGGCCGAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCTTGTGCTGAGGCTTTTCTTCCTCCTATTGATCAATCGGAAGGTGTCCCTTTACTGTTCCAAGATATAAAGGGGAACGAGTGGACCTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGTGTGACCCCGTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTGACATTTAGTCGGATAGATTCCGAAGAAAAATTTGTACTTGGTTTTAGAAGAGCATCGGGTTCTACGGATACGCAGGATGACTCTACATCTGCTCATTCTAATGGGTTTTCGACTAAGGATACAAATGTTTCTGGTGCAACTAAAAATCTGAACTCGTTAAGTAGTTTTTCTGATCTTCTTCAATCAATGAAAGGTAACAGGGAACCTTACTTAAATGGACATTCAAGACATCTGCATTTGGGTAATGGAACTCCTTATTGGCTGAAAACTGCACATTGTGAGGAGGCGGCGAACAATGGTCCATTGCAGCAACAGGTTTCGGTTTCAGATAAGAAAAAGACTTGCAAGATTGGGACAAAAACTAAGAGGTTGCACATTCGTAGTGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCGCCGCCTAATGTCAAGCCAAATATTGTACAAATCGACGACCAAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAACTATAACCAATGCCTGTCCATCTGGCTCTCCATGTTCTGCATCAGAGCAGCTCGGTCCAAACGAACAAGAAAATCTTCAGCGAACCAGAAAAGCTTCTAAAAAGCGAAAAATTGTAGAAAAGAGTAACTCAATTGAAGAAGACAAGCTTCAAGACCTAGATACTCTTGCAAGTATGGCAATTTTAGGAGACAATCTTGCTGACCTTGACGAGCCAACTTCAGCTGGAATCACCACAAAACATCCGAGACATCGTGATGGATGCACTTGTATCGTCTGCATTCAATCCCCAAGTGGACAAGGAAAACATAAACCGACATGCACTTGCCTTGCCTGCGAAACTTTGAAGCGCAGGTCCAAGACTCTTATGATGCGTAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTCCCCAAAATGATCAAACGAATCATAGCGGTGAAGCAGATACCAGTGGTGATGCATCAAGACAAGATACAAGTAACTCAACGGACGAGGTAAGCCTAAACGGTGGTCAGAAAGAGGCTGTTGAGCCTAGTGCCGCGGGACAATTAGATTTGAATTGTCATCCCGATCATGAAGATATGTAA TTGCTCATCAATTTCTCAATCAATTCCACAATTCAAACCCTANNNNNNCAACAACAGGAGAAACCTTATTTGTGTCGTGTTTGCGAAAGGGCTTTTACATCCAACCGAGCTTTGAATGGACATATGAGATGTCACGGTTCCAAGAAGGGTACTTCTCCATTTTTGACTTGTCAAGATGCTATTGACTTGTCAAGGTTTTTGCCCCCAAAAACCTACAAGACCCGTCAACGTTCCAAGAGATTTGTCATTGATGATGATGTCCGTGAGGTTGCTCAATCATTGTTAGATATGTCTTGTGGGAAATCGTTATATTTTGATGCGGATAATCACGATAACAACGGTAAAAGATTGAAGCTTTCCGATGAAAAAGCAAGGTGTTGA ATGGGGGTTGAAGTTTGTATGAATAAATTGTGTAAGGAAAGTTCTATTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCAAAACTCTGCAACAAATGCGGACTTGCCTATGAGAATTCAGTTTTCTGCGATCAATTTCACCGTCTTGAAGCCGGTTGGAGGGAATGCAACAATTGCAAGAAGCTTATCCACTGCGGATGTATAGTATCAAAGTCTTTGTTCGAGTACCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACTGGAAATGCTAATAGGTTTGCTCATATAACTAAAAACAATGCAAATGATCGATATGCTGAACATACTGATGGTGGACTCTCGGTGGAACGTGTTGGTAAAGGAAACCTTATGCAGTTACGGAAAACTGCTGAAGCTGGTGAAACAAGCTTTTGGCCACAAGCTCAAAGAGATGGTGTGTTTTCGAGTATTGGTTCAAAAAGCGAAGAAATTAATTGTCGATTCAACAAAACTGATACAGGATTTTTAAATGTGATGAAACATTCTAGTCATTTATCGGCACTTACTACATCAGAAAATAATAGACCAACATGGGAGACCAAAAGTAGAGATGAATCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTGTCCTGCCTTCTGCCAAAGAGATTGTAGAAGGTAAACTTGAGGGTAAAGCATCTTCTATTTCTCAACAAGGGCACAATTCTTACCCTATATTGGCTAAACAACCGAAGACCGGTGTTACATTGAATCTTGAAACAAATAAAGGCATGATTTCTCTTCCACGCATTGGTCGACCACCTGCTGATGTGAAAGGGAAAAATCAGTTACTTTCTCGATACTGGCCGAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCTTGTGCTGAGGCTTTTCTTCCTCCTATTGATCAATCGGAAGGTGTCCCTTTACTGTTCCAAGATATAAAGGGGAACGAGTGGACCTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGTGTGACCCCGTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTGACATTTAGTCGGATAGATTCCGAAGAAAAATTTGTACTTGGTTTTAGAAGAGCATCGGGTTCTACGGATACGCAGGATGACTCTACATCTGCTCATTCTAATGGGTTTTCGACTAAGGATACAAATGTTTCTGGTGCAACTAAAAATCTGAACTCGTTAAGTAGTTTTTCTGATCTTCTTCAATCAATGAAAGGTAACAGGGAACCTTACTTAAATGGACATTCAAGACATCTGCATTTGGGTAATGGAACTCCTTATTGGCTGAAAACTGCACATTGTGAGGAGGCGGCGAACAATGGTCCATTGCAGCAACAGGTTTCGGTTTCAGATAAGAAAAAGACTTGCAAGATTGGGACAAAAACTAAGAGGTTGCACATTCGTAGTGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCGCCGCCTAATGTCAAGCCAAATATTGTACAAATCGACGACCAAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAACTATAACCAATGCCTGTCCATCTGGCTCTCCATGTTCTGCATCAGAGCAGCTCGGTCCAAACGAACAAGAAAATCTTCAGCGAACCAGAAAAGCTTCTAAAAAGCGAAAAATTGTAGAAAAGAGTAACTCAATTGAAGAAGACAAGCTTCAAGACCTAGATACTCTTGCAAGTATGGCAATTTTAGGAGACAATCTTGCTGACCTTGACGAGCCAACTTCAGCTGGAATCACCACAAAACATCCGAGACATCGTGATGGATGCACTTGTATCGTCTGCATTCAATCCCCAAGTGGACAAGGAAAACATAAACCGACATGCACTTGCCTTGCCTGCGAAACTTTGAAGCGCAGGTCCAAGACTCTTATGATGCGTAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTCCCCAAAATGATCAAACGAATCATAGCGGTGAAGCAGATACCAGTGGTGATGCATCAAGACAAGATACAAGTAACTCAACGGACGAGGTAAGCCTAAACGGTGGTCAGAAAGAGGCTGTTGAGCCTAGTGCCGCGGGACAATTAGATTTGAATTGTCATCCCGATCATGAAGATATGTAA ATGCCAGGGAAACCTGAAACCGATGATTTGGGAGTAAAGCATAGTGAGTTGCCATCTTCCATTTACTCACATCAGCCTTGGTGGCTTGAAAATGCCTCCAAATCATCCTCAGCTGATCAGCTAAATGGTTCAATCATGAATGGTGTAACACATTTAGAGGCTAATGAAAGACAGCATTTGGTTTCGCCTTCACTTTATGTAACTGATAAGTCAGGTGGGGATGTTGTCAAGGAGCAGCAAAACATCAAACACGCCCTGTCCTCAACTCCATTTACCATGGACAAACACCTTGATGGTCATTCAATTGTTTTAACATCCCCTTATTCAAATGCAGAGTTTGGTCAAATCTTGACAACTTATGGACAACAAGCTATGATGAACCCCCAGCTATACCAAATGCATCATGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGCGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTACACGAATCCCGTCACCTACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGCTTTCTCAATACAAAGAAGCTCGAACATAAAGATTCTCATGCCGCTCTAGAAAAAGACAACAATACTGGTACAACATTGGTTACCAACAAGGAGAATCAAGGCTCATCTAATGCGTCGCAGTCCGTGCACAAAATGCAGGGTTTCAACATCGGTTACTGTGCTGGAAATGGCTTTACAGCTCTATGTCATTCACAGGCAAATGGAAAACAGGAGAGTGACTTCTTTGGTAAAGAGAGGGAATCAAATGGTGGTATTAAATGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA1894|Trifolium_pratense|NF-YA|Tp57577_TGAC_v2_mRNA1894
MPGKPETDDLGVKHSELPSSIYSHQPWWLENASKSSSADQLNGSIMNGVTHLEANERQHLVSPSLYVTDKSGGDVVKEQQNIKHALSSTPFTMDKHLDGHSIVLTSPYSNAEFGQILTTYGQQAMMNPQLYQMHHARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHKDSHAALEKDNNTGTTLVTNKENQGSSNASQSVHKMQGFNIGYCAGNGFTALCHSQANGKQESDFFGKERESNGGIK*