Information report for Lus10031505
Gene Details
|
|
Functional Annotation
- Refseq: NP_001268178.1 — lipoxygenase
- Swissprot: Q43191 — LOX15_SOLTU; Probable linoleate 9S-lipoxygenase 5
- TrEMBL: F6HZ10 — F6HZ10_VITVI; Lipoxygenase
- STRING: Lus10031505 — (Linum usitatissimum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0016702 — Molecular Function — oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- NF-YA proteins are characterized by the presence of Gln(Q)- and Ser/Thr(S/T)-rich NH2 termini, a subunit interaction domain (NF-YB/NF-YC interaction), and a DNA-binding domain (Olesen and Guarente, 1990; Maity and de Crombrugghe, 1992; Xing et al., 1993, 1994). The protein interaction and DNA binding domains are well conserved between plant and other eukaryote lineages.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Lus10031505|Linum_usitatissimum|NF-YA|Lus10031505
ATGCAGAAAATCATCGACTGCTTGAGTGGCCATGGCAATGGCGCCGAGAAGAAGAGGAAGCAGAAGAAGATCAAGGGAACTGTGGTGCTGATGAAGAAGAACGTCCTCGATTTCAACGACTTCAACGCTTCGATCCTCGATCGTATCCACGAGCTCCTCGGCCAGCGTGTCTCCCTTCAGCTCATCAGCTCCGTCCATGCCGACCCCAAGAATGGAAACACAGGGAGGCTAGGGAAGGCAGCGTACCTGGAGAACTGGATTCCGACTATAGCTCCATTGACAGCCGGTGAAACATCCTACACTGTAACATTTGACTGTGACGAACAAGACGACAATCCAGGAGGGTTCCTGATCAAGAACAACCACCACAATGAGTTCTATCTCAAATCCTTAACCCTCGAGGACATCCCCGGCCATGGCAGGATCCATTTCGTCTGCAACTCGTGGGTTTACCCTGCTAAACGATACCAGAAAGACCGCGTCTTCTTCACCAACAAGACTTACCTACCTCACGAGACGCCATTGCCACTTGTTAAGTACAGAGAGGAAGAGCTGGTTACCTTGAGAGGCAACGGAGAAGGTGAGCTTCAGGAATGGGACAGGGTGTATGACTATGCTTTATACAACGATCTCGGAAATCCCGACAGTGATCCGAAGTCTGCTCGACCGACTCTCGGAGGTTCGGTCGAGTACCCTTATCCTCGCAGGGGGAGGACTGGTAGGCCGCCATCAAAATCAGATCCTACGGTAGAGAGCAGGGTGCCGTTACTGATGAGCTTAGACATCTATGTACCAAGGGATGAGAGATTTGGTCACCTGAAGATGTCTGACTTCCTTCTCAATGGACTGAAAGCGATCGTCCAGTTCGTCAAGCCTGAGCTGGAGGTTCTGTGTGCTGAGAACAAGAACGAATTCGATTCGTTCGAGGAGGCCTTGAAGATCTACGATGGAGGTGTGAAGCTCCCTGGCGGCCCTGCACTTGATAGTCTCTGGAAGAATGTTTCACTGGATATCATCAAGCAGATCTTTCACACTGATGGGGAGAGGATTCTGAAATACCCGTTGCCTGAAGTAATCAAAGAGAGCAAGACCGCATGGAGAACTGATGAAGAATTTGCCAGGGAAATGCTAGCTGGCCTTAACCCTGTTGTCATACGTCTACTTCAGGAGTTTCCTCCTAAGAGCAAGCTGGACCCTAATGTCTATGGCAATCAGGATAGTTCAGTAACTGAAGAACACATAAAGATTGGCCTAAATGGATTAACCATAGCTGAGGCAATCAAGAACAACAAGCTATTCATACTGGATCACCATGACACATTGATGCCATACCTGAGGAGGATCAACGAAACCCCTTCGACCAAAACGTACGCAACGAGGACGATTCTATTCTTGCAAGACGACGACACTCTGAAGCCCCTTGCGATTGAGCTGAGCTTGCCGCATCCTGATGGAGACAAGCTTGGATCCATCAACAAAGTCTACACTCCACCGCTAGCGGATCATCATCAAGAAGGCAGCCTTGAAGATTCCATTTGGCAACTGGCTAAAGCTTATGTAGCAGTCAATGACTCCGGATACCATGAACTCTTCACCCACTGGTTGAACACTCATGCTGTGATCGAGCCGTTCATAATTGCAACAAACAGGCAGCTAAGCGTGCTTCATCCAATCCACAAGCTTCTCCACCCTCATTTTCGGGACACGATGAACATAAACGCGCTTGGGAGACAGATCCTCATCAATGGTGGAGGGCTGGTGGAGGCAACTCTTTACCCTTCGAAGTACTCCATGGAGATGTCTTCTTTCATTTACAAGGACTGGAACTTCACTGAACAAGCTGTCCCTCAGGATCTCAAGAAGAGGGGAATGGCAGTTTTCGACCCAAACTCCAAGCACGGCCTCCGGTTACTCATCAAAGACTACCCTTATGCCGTCGACGGCCTCGACATCTGGTCAGCGATCAGAAATTGGGTCTCAGATTACACATCTCTGTACTATAAATCCGACGCCGATATTCAACGCGATTCCGAGCTTCAATCATGGTGGGAGGAGCTTGTGGAAATCGGCCATGGTGACAAGAAACATGAAACCTGGTGGCCGAAGATGCAGACTCGATCCGAGCTCATCGAATCCATCACAACAGTGATCTGGATCGCGTCGGCTCTCCATGCATCGACCAATTTCGGACAGTACACATACGCCGGATACCTGCCGAACCGACCGACGACCAGCCGCCGGTTCATTCCTGAAGAAGGCAGCCCTGAGTTCGAGGAGCTGAAGACAGATCCTGACAGGGCGTTCCTGAGGACAGTGACGGCGAGGCTTCAGACTCTGATAGGGATCTCGCTGATCGAGCTCCTGTCGACGCATTCTTCCGACGAAGTTTACCTTGGCCAGAGGGAGACGAAGGAGTGGACGGCGGACTCGGAGGCGGTGGCGGCGTTCGAGAGGTTTGGAGATGAGCTGGCCGAGGTGGAGAAGAGGATCGTGGAGAGGAACGGCCAGGTGAAGCTGAGGAATCGGAATGGCCCGGTGAAGGTACCGTATACTCTGCTTTTCCCGACGAGCGAAGCTGGCCGGACCGGCAAGGGAATTCCGAACAGTACATGTTCAACTGGTCGGACAACTAAGGCAGGCTGGCATGCCTTTGTTGAAGAACCAGTGTTTGTTAATGCAAAGCAATACCATGGCATATTGTCCAGAAAAGCTACATTGTGCTGCCTGCTGAAGATTCATACTTGCTTCATAGTTCAAGTCCGACTTCCATCAAATGGAACTCAGAAATTAATTGTTACGGACTTAATCGCTGGTTTTCGCGATGCTCTGATATGTTGCTTGCATTTTGGCCTGTGCTTGCGTAGTTCTTGCTGTTCCTTCATCCCTTCTGCACTTGCTTCGTCTTCCTGCTTGCTTCTGTATGCTAGTCAGCTTGTGTCCTCTTAA
Protein Sequence:
- >Lus10031505|Linum_usitatissimum|NF-YA|Lus10031505
MQKIIDCLSGHGNGAEKKRKQKKIKGTVVLMKKNVLDFNDFNASILDRIHELLGQRVSLQLISSVHADPKNGNTGRLGKAAYLENWIPTIAPLTAGETSYTVTFDCDEQDDNPGGFLIKNNHHNEFYLKSLTLEDIPGHGRIHFVCNSWVYPAKRYQKDRVFFTNKTYLPHETPLPLVKYREEELVTLRGNGEGELQEWDRVYDYALYNDLGNPDSDPKSARPTLGGSVEYPYPRRGRTGRPPSKSDPTVESRVPLLMSLDIYVPRDERFGHLKMSDFLLNGLKAIVQFVKPELEVLCAENKNEFDSFEEALKIYDGGVKLPGGPALDSLWKNVSLDIIKQIFHTDGERILKYPLPEVIKESKTAWRTDEEFAREMLAGLNPVVIRLLQEFPPKSKLDPNVYGNQDSSVTEEHIKIGLNGLTIAEAIKNNKLFILDHHDTLMPYLRRINETPSTKTYATRTILFLQDDDTLKPLAIELSLPHPDGDKLGSINKVYTPPLADHHQEGSLEDSIWQLAKAYVAVNDSGYHELFTHWLNTHAVIEPFIIATNRQLSVLHPIHKLLHPHFRDTMNINALGRQILINGGGLVEATLYPSKYSMEMSSFIYKDWNFTEQAVPQDLKKRGMAVFDPNSKHGLRLLIKDYPYAVDGLDIWSAIRNWVSDYTSLYYKSDADIQRDSELQSWWEELVEIGHGDKKHETWWPKMQTRSELIESITTVIWIASALHASTNFGQYTYAGYLPNRPTTSRRFIPEEGSPEFEELKTDPDRAFLRTVTARLQTLIGISLIELLSTHSSDEVYLGQRETKEWTADSEAVAAFERFGDELAEVEKRIVERNGQVKLRNRNGPVKVPYTLLFPTSEAGRTGKGIPNSTCSTGRTTKAGWHAFVEEPVFVNAKQYHGILSRKATLCCLLKIHTCFIVQVRLPSNGTQKLIVTDLIAGFRDALICCLHFGLCLRSSCCSFIPSALASSSCLLLYASQLVSS*