Information report for fgenesh3_pg.C_scaffold_15000025
Gene Details
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Functional Annotation
- Refseq: XP_005845959.1 — hypothetical protein CHLNCDRAFT_53340
- TrEMBL: E1ZJG5 — E1ZJG5_CHLVA; Uncharacterized protein
- STRING: XP_005845959.1 — (Chlorella variabilis)
- GO:0005975 — Biological Process — carbohydrate metabolic process
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010262 — Biological Process — somatic embryogenesis
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0004553 — Molecular Function — hydrolase activity, hydrolyzing O-glycosyl compounds
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
- NF-YA proteins are characterized by the presence of Gln(Q)- and Ser/Thr(S/T)-rich NH2 termini, a subunit interaction domain (NF-YB/NF-YC interaction), and a DNA-binding domain (Olesen and Guarente, 1990; Maity and de Crombrugghe, 1992; Xing et al., 1993, 1994). The protein interaction and DNA binding domains are well conserved between plant and other eukaryote lineages.
Literature and News
Gene Resources
Homologs
- Brassica napus: GSBRNA2T00103373001
- Glycine max: Glyma.09G068400.8.p, Glyma.09G068400.6.p, Glyma.09G068400.4.p
- Gossypium hirsutum: Gh_D10G0506
- Raphanus raphanistrum: RrC7363_p1
- Ziziphus jujuba: XP_015889304.1
Sequences
CDS Sequence:
- >fgenesh3_pg.C_scaffold_15000025|Chlorella_variabilis_NC64A|NF-YA|fgenesh3_pg.C_scaffold_15000025
ATGGTGTGTCTGCACTTCAATCGGAGGGTTGCGCGCGCCCTGGTGGAGGAGGGCTTCCGGCTGGACCGGAAGGAGGGCTTCCATGCCTCGTACATTTTGCTGGATCTGCCGTGGGACGAGGACGGCCTTCGGCAACGTCTCGGCGAGGAGCTCCATGCGGCAGTGCAGCGCGACGACCGGACAGCGTTGCGTGCGCTGCTGGCGGCTGCCGACGGTGGCGACGCCGTGCGCGCCAGGAGCGACCGTGGCTGGACGCTGATGATGGAGGCGGCCGCCAGGGACCGCGCCGCCCTGGTGCACGAGCTGCTGCCCCACTTTGATCTGGAGGCCGTTGACGCGCAGGGCGCCACCGTGCATGCGCTGGCGGCGTGGAATGGCGCGGATGCTGCGCTGAGAGCGCTCGGCCCATACCGCGGCACGGTGGGCAGGGACGGCCGGTACACGGCATTGCACCAGGCAGCGTCCGCCGGCCGTGCCAGCACTGTGCATCTGCTGCTGGAGCAAGGCCCCGACGACGGCGGCAGCACCTGCTCCACCGGCGAGACGCCGCTGCATCGTGCAGCCGCCCAGGGGCACACTGCGGTAAGCGCCGCTGTCAACGCCCGCACCAATGCTGGTTGGACGCCGCTGTTCCTGGCGGCGCGTGCGGGCAGCGTAGAGGCGCTGGTGGCACTGCTGGATGGCGGGGCAGACCCGCTGGTGCCTGTGGGCCCCGCAGCGCATCGGCGGCTGTGCTGGGAGGCGCTGTGCCTCAGCGAAGGGGTGTCCACTGAGCAGCACGGCGCGGCCGCAGAGGCGCTGCTTCACTGCACGCTGCGCTGCGTGGCGCAGCAGGGCAGGCCGTGGCGAGGATGGACCGAGGGCAGCCTGCTGGGTGCCCTCACCCCGCTGCACCTGGTGGCGCTCTGCGGCGACGCGGCCAGCATACGGCAGGCGGTGGCAGCGCCTGGTGCCGCCGCCCTGCTCACCCAGCGCACCGGCGGCGTGCTGGGCGGCGCCAACCGGCTGACGGCGCTGGAGCTGGTCATTGATCTGTACAGCGGCCTGCCGGAGCGTGGCGGCGCGGCACTGTGGCAGGCGGTGGCACCGCCGCTACTGCCCAGTTACGGCAGTGCCGCGCCGCTGGCAGAGATGCTCGTGAGCGATCGGTTGCGCGGCGGCGGCGCCATTGTCACGCCGCAGCTGCTGGCGGCAGGGGCCCTGGGGGCAGATACTGGGGTAGTCAGGCGCTTGGCGCAGCTGGGCTACGGTCCCAGCCGTGGCGAGGACCTGGCGGCTGCGGTGGCGCAGCTGGCGGCGGCGCTGCGGGCGCACGCTGACGGCTGCGGCGGCGGCGGTGGCGGCGGGGCTGCCAAAGACCGCTCAATGATGGATGCCTTGAAGAAGGTCACGACCAAGCAGTGCATGAAGCTGCCGGGCAGTGTGCTGTCCGACTTCCTGGCGAACGGCGTGGGCAGCGCTGTGCTGCAATTCATACAGGACCATCACGACAAGGTGCCTCACCTGGTGCTGTCGCTGATGGGGCAGTGCTTGACAGTGTGTATTATACCTCTCAGATCCTTCACCTACATTGTTTTTATCTTTCAGTTCTACGATCAGATCTCTGTCATCCCTTCCAGTTCCCTGTGCACATCATCAGCTCAAGCTTGCAGCAACTTGAGCTCGGAGAGTATTGCAGCGTTGTCTATCGTGCCTGTAAGACCTTCGACCATCAATCCGCGTTATTGCAGGCCCACCCGGAGGGCACAACCTAACTGGCAGCGTCTCCTGGCCGCTTGCCGGTGCCCATCCTGCGAACTGTTGACCCTGCCCGGCGCACGCAGCAATAATTTACGTGTTGGGTTGTCTGGTAGCGCAGGTGGCGGCCAACGCGGCATGAAGGGACGCGAGCTGAGAGGACCTTGCGCCGCGTTGCTGCCGCTCCTCACGGCGCTTCTTGCCACCTGCGTGGACCATGCACGGGCGCAAGACTGCGCGGCGCAGCTGCGGGCGGCCGCCGGGGCGGGTGCCACCACAGAATGGATTGACCCAGCCACTCCCGATGATGCCTGCACGGCACAGCTATGCACCGGGGACTATGCCGCCTGCAACCTGGTATTCAGTGACGAGTTTGAAACTCCCGGCCAGGCCTTTGGCCCGGCGGCGGGCAACCCGCGCTGGACGGCGGAGCGTATGTGGTATTGGGTGACCGAGGACATTGAGGTGTACCTGCCTGAGCAGGTCACCACAGAAGGCGGCGCCGCCGTCATAACGGTGGACAGGGTGGCGGCGGGGCAGCCCAACGCCACCGCGCTGGCGCAGCGCCCCGACGGCGCCGTGTGGAACGCCTCCTCGGCCTTCAAGTCGGGCTTTGTGGACAGCTGGAACAAGTTCTGCTTCACGGGTGGCTACCTGGAGGCGCGCCTGCAGCTGCCGGGGGACGAGGTGGTGTCTGGATTCTGGCCCGCGCTGTGGCTGATGGGCAACCTGGGGCGGGCCGGGAGGGCCCAGTCCACCGCCGGCATGTGGCCCTTTACGTACGACACGTGCGGCGGCGGCGACGCGGGCCCCACCCAACAGGCCATCTCCGCCTGCCCAGACCCGCCCGGATTTGACCGCACCAAGTTCGGGCTGGTGCCGGGCCAGGGGCGCGGCGCCCCTGAGATTGACCTTGTGGAAGTGATGGTGGGCTCCAGCAGGAGGCTGAAGCCGGGCCAGCGCCCGCCCGACCCCAAGCCGGGGCAGCAAGTGTACCCTCACAACCTGCTGACGCTGCAGGCGTGTGGTGCTGCGTGTGATGGCGCCGCGCTGCTGGCGCCGCCGTCGCTGGCGCCGCCGCTGACCGCGCCGCCGCTTCCCAACGGCACCACATGGACGGATGAGGGCAAGCCGGGGCCAGGGCAGTACCTTCCGCAGGACTTCCTTCCAGAGGGCATGGTGACAGAGACGGCCTGGTGGAAGGGCCCCTTCACAGAAGCCAATGACAGCCAGCAGACGAGGCCGGGGAGCCTGTACCAGGATGCGGTGGGGGCCTACGCCTCGCTGGAGCCTTCATTCTGGACCGCCTACCACACCTTTGGCCTGGTGGGTGGCCTGGCTGGCCTGTGGCACGCCGCGCACTGGGTGCCGGGGCAGTACATCCGATGGTACATCGACGGCACCCTGGTGTACGAGGTCGGCAGCGAGGCGCTGAGGGCGCAGACCAACAGCACCGGCTACACCACATATGAGCGCCTCGTGCCGCTGGAGCCCATGTACATCATATTCAACCTGGCCATGTCCAACTCGTTTGGGTACGTGGACCTGGAGAAGCTGGAGTTCCCGTCGCAGTACAAGGTCGACTACATCCGCGTGTTCCAGAACGCCTCGGCCGTCAACCTGGGCTGCAGCCCCAAGGACTTCCCCACCCAGCAGTACCTGGCCTGCAACCGCGACAAGTATTTGCTGACAGAGGAGGACCAGGGGCTGGTGCAGGGGGCCTGCCTGCAGGCGCCCTCCTGCCGCCAGGAGGCCAACGTGAACTTCGAGGGCGGGGACATCCCGTCAGGCGACGGCCAGACGTTTGTGCAGCCGCGGCAGCTGGGCAGCGCACGGGAGTGCTGCCAGGCGTGCCAGGCCATGCCCGCCTGCGGCGCATACGTCTACTCTACATCGCAGCAGACCTGCTTCTTTAAGGCGCCCACGGGGTGGACCAAGGCGCCCGTTGCCGACCAGCAGTGGGGGGCGCTGGCGGGGGTGGTGTACGACGCGGGAGAAAGCTGGCCACGCGGCACAGAGGGCAGCGGCGGGCCCCCACCCCCGGCGCCCGACGGCAGCCCTTCGGCGCCCCCACAGCCTCCCAGCGGTGGCAGCGGCGTGCCGCCGCCGGCCCCCGACGGCGACGGCGCTGCGCCGCCCCCACGCCCGTCCAGTGGCAGCAGCGCCATGCCACCGCCGCCGGACACTGACGAAGCCAGCCCGGCGCCGCCCCCTGCGCCCTCCAGCGGCGGCGCTCGGTCGGGTGGGCGCGCCGCCCTGCAGCTGGCGGCGCTCCCAGGGGAACATCCAGGGCGCGCCTGCGGGCGGGCAAAGGTGGAGGCGGCAGCGTATCATGCGGCGGCGCAGCAGCAGGCGGGCGCCAGCGGGGGCCTGCTGCACGTCAACCCCAAGCAGCTGGCCTGCATCCTGCGGCGGCGCAGCAAGCGGCAGAAGCAGGAGGCCGAGAACAAACTGCCCCGCGTGCGCCAGCCCTACATCAACAAGAAGCTACACACCCACGCCACAGGCCGGCTGCGCGGCAGCCACGGAAAGTTTCTCAGCAACGCCGAGGCGGCGGAGCAGGAGCGGCGCCGGGCAGCAGAGCCCGCCGACCGAGCAGACACCTGCCTGGGGCGGCAGCCCGAGCACGAGGAGGAGGGACAAGAGGAGCCGCTGGAGCAGCAGGAGGAGGGCCTAGATGAGCAGGAGCAGCAGGAGCAGGAGGAGGAGGAGGGCGAAGGCCTAGAGGAGGAGGGTGGCTCGGAGGATGAGCCGCAAGAGGCGTCGCCGGCAGAGGCACGAGCGCAGCAGCAGCAGCAGCAGCAGCATGACCCAGCAGACCGCAGCTAG
Protein Sequence:
- >fgenesh3_pg.C_scaffold_15000025|Chlorella_variabilis_NC64A|NF-YA|fgenesh3_pg.C_scaffold_15000025
MVCLHFNRRVARALVEEGFRLDRKEGFHASYILLDLPWDEDGLRQRLGEELHAAVQRDDRTALRALLAAADGGDAVRARSDRGWTLMMEAAARDRAALVHELLPHFDLEAVDAQGATVHALAAWNGADAALRALGPYRGTVGRDGRYTALHQAASAGRASTVHLLLEQGPDDGGSTCSTGETPLHRAAAQGHTAVSAAVNARTNAGWTPLFLAARAGSVEALVALLDGGADPLVPVGPAAHRRLCWEALCLSEGVSTEQHGAAAEALLHCTLRCVAQQGRPWRGWTEGSLLGALTPLHLVALCGDAASIRQAVAAPGAAALLTQRTGGVLGGANRLTALELVIDLYSGLPERGGAALWQAVAPPLLPSYGSAAPLAEMLVSDRLRGGGAIVTPQLLAAGALGADTGVVRRLAQLGYGPSRGEDLAAAVAQLAAALRAHADGCGGGGGGGAAKDRSMMDALKKVTTKQCMKLPGSVLSDFLANGVGSAVLQFIQDHHDKVPHLVLSLMGQCLTVCIIPLRSFTYIVFIFQFYDQISVIPSSSLCTSSAQACSNLSSESIAALSIVPVRPSTINPRYCRPTRRAQPNWQRLLAACRCPSCELLTLPGARSNNLRVGLSGSAGGGQRGMKGRELRGPCAALLPLLTALLATCVDHARAQDCAAQLRAAAGAGATTEWIDPATPDDACTAQLCTGDYAACNLVFSDEFETPGQAFGPAAGNPRWTAERMWYWVTEDIEVYLPEQVTTEGGAAVITVDRVAAGQPNATALAQRPDGAVWNASSAFKSGFVDSWNKFCFTGGYLEARLQLPGDEVVSGFWPALWLMGNLGRAGRAQSTAGMWPFTYDTCGGGDAGPTQQAISACPDPPGFDRTKFGLVPGQGRGAPEIDLVEVMVGSSRRLKPGQRPPDPKPGQQVYPHNLLTLQACGAACDGAALLAPPSLAPPLTAPPLPNGTTWTDEGKPGPGQYLPQDFLPEGMVTETAWWKGPFTEANDSQQTRPGSLYQDAVGAYASLEPSFWTAYHTFGLVGGLAGLWHAAHWVPGQYIRWYIDGTLVYEVGSEALRAQTNSTGYTTYERLVPLEPMYIIFNLAMSNSFGYVDLEKLEFPSQYKVDYIRVFQNASAVNLGCSPKDFPTQQYLACNRDKYLLTEEDQGLVQGACLQAPSCRQEANVNFEGGDIPSGDGQTFVQPRQLGSARECCQACQAMPACGAYVYSTSQQTCFFKAPTGWTKAPVADQQWGALAGVVYDAGESWPRGTEGSGGPPPPAPDGSPSAPPQPPSGGSGVPPPAPDGDGAAPPPRPSSGSSAMPPPPDTDEASPAPPPAPSSGGARSGGRAALQLAALPGEHPGRACGRAKVEAAAYHAAAQQQAGASGGLLHVNPKQLACILRRRSKRQKQEAENKLPRVRQPYINKKLHTHATGRLRGSHGKFLSNAEAAEQERRRAAEPADRADTCLGRQPEHEEEGQEEPLEQQEEGLDEQEQQEQEEEEGEGLEEEGGSEDEPQEASPAEARAQQQQQQQHDPADRS*