Information report for estExt_Genemark1.C_40311
Gene Details
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Functional Annotation
- Refseq: XP_005649866.1 — hypothetical protein COCSUDRAFT_65191
- TrEMBL: I0Z3V3 — I0Z3V3_COCSC; Uncharacterized protein
- STRING: XP_005649866.1 — (Coccomyxa subellipsoidea)
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009651 — Biological Process — response to salt stress
- GO:0009908 — Biological Process — flower development
- GO:0010310 — Biological Process — regulation of hydrogen peroxide metabolic process
- GO:0042335 — Biological Process — cuticle development
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:2000037 — Biological Process — regulation of stomatal complex patterning
- GO:0005634 — Cellular Component — nucleus
- GO:0016021 — Cellular Component — integral component of membrane
- GO:0000987 — Molecular Function — core promoter proximal region sequence-specific DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The human NF-X1 protein and homologous proteins in eukaryotes represent a class of transcription factors which are characterised by NF-X1 type zinc finger motifs. The Arabidopsis genome encodes two NF-X1 homologs, which we termed AtNFXL1 and AtNFXL2.
- The Arabidopsis AtNFXL1 and AtNFXL2 proteins are characterized by NF-X1 type zinc fingers, which potentially mediate DNA binding, and PHD finger motifs, which potentially mediate protein interactions. The AtNFXL1 protein is part of a regulatory mechanism, which improves the physiological status of plants and supports growth and survival under stress.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >estExt_Genemark1.C_40311|Coccomyxa_subellipsoidea_C-169|NF-X1|estExt_Genemark1.C_40311
ATGGCGCCAGCACTGCCAGGCGCAGACCTGGAAAGCAAGCCCATGCAAGCGGCAGCGGAGGACATCTTGAGGGACTACACCGCTCGTCTCGGCGATGCGGCGGTGGCGCTGGAGGGGCCCGGGGGGGAGGTCTATAGCGTGGGCCTCAGCCGGCTGCGCGAGCAGATCAGCTCGACGCAGGCGTGTGCGGACGTATGCCTGGTGTGCCTCGAGAATATCGCGCCGGACGCGGCCGTGTGGACCTGCCGCAGGTCCTGCCACGTGCTGCTGCACCTCATCTGCGCGCAGGCCTGGGGACACCAGCAGCTGCAGCAAGCAGCCGCAGCCGCGCGCGCCTCCGCCGAGCACCCCGACCTGTCACTTGGTCCGGTGGCCTTGCAGCCCAAGGCGGCGCAGCATGTGTGGGGATGCCCCAAGTGCCGTGAGGAGTACACCGCAGCGGAGGCGCCCAGCGAGTACCGCTGCATGTGCAGCGCGGAGCTGGACCCGGTGATGGCTGCATGCTTCTGTGGCAAGGCAAGCGCCGAGCGGCGGTGCGCCGCGTCGGGCTGGTCCTGCAAGAAGCTCTGCGGCAAGCGCCTGCCCTGCGGCCACCGTTGCCCCGCGATCTGCCACCTGGGCGACTGCAAATCCTGTAGCCTGACAGGCGAGTATGCGTGTGCGTGCGGCGCGGTGACAGAGAGGAGGCGCTGCGAGGAGCGCGTCTTCAACTGCGGGCGCGTGTGCGGCAAGACGCTGGGCTGCGATCGGTGTAACTGCGATCGCGTGTGCCACTCGGGCTCATGTGGAGAATGCCCCAGAGCCGGCGTCCGCACCTGCCCCTGCGGCAAGGTGGCGCACAGCAACCTGCCCTGTGACGAGGCTGCTCCGCCGTGTGGAGCCACCTGTGGGAAGCTGCTGTCCTGCGGGCGCCACCATTGTGCGGACCGGTGCCACCCGGGCGAGTGCTCATCCACCTGCCGAGCGATTTCCGAGAAGAGCTGCGCCTGCGGCAAGATGCAGAAGTTGGTGCCCTGCGCCGAGCCATTCAGGTGCGAGAGGCGATGCACAGGCATGCGCGCATGCGGCAGGCATGCATGCAAGAAGCGGTGCTGTGACGGCAATCACCCGCCATGTGATCAGGTGTGCGGTCGGCGGCTGCGCTGCGACAATCACACCGACCCATCGCCGTGCCATGCGGGCGCTTGCCTGCCCTGCCCGCTGACTGCCAGCGTGTCGTGCGCCTGTGGGAGGACGACGTACTCACTGCCCTGCGGCTCCGAGGGGGGCGCCAAGGAGCCCACCTGCGACCAGGCATGTGGGCATGTGTGTTCCAGCAGCAGCTGCCACCATCCTCCAGTGCCACCCGTGCGCGCATTCCAGCCGCCGCCAGCCCCCACATCAGAGGGCATTCCCTCCGCTCGCTCGCACAAGAAAGTCTTCGTCGATTACACGCCCCCGGCACAACAGGTGGCGCTTGCTGTGAGGGCTGCGCCGGCAGTGGACAGCCAGTGCCCGCCCTGCACTGTGCCGGTAACCGTACACTGCTTCGGCATCCACTCCTCTGCGCAGTGCCCATGCTCTTCCGCCGCGCCGTTCTCCTGCAGCATTCCCTGCGGCCGGCCACTGCCCTGCGGCAACCATACCTGCTCCCGCCCCTGCCACCTGCTGGGCGAGAGGCAGGCTGATGGCTTGATTGAGGGGTGCCTGCCGTGCGGGCTGACATGCCAGCGACACCGGCCCTGCGGCCATGCCTGCCTCCTCGAGTGCCACACCTCGGACTGCCCCCCCTGTGAAGTGGAGGCTAGGAGGCAGCCGGGAGCAGAGCTGCAGTCTCTGCTGTCCTGCGGCAAGCCCTGCTACAGGAAGCTTCCAGAGTGCCCCCACCATTGCGAGGCTATCTGCCATCTGAGTGAATGCCCTGCATCATCCAGCTGCCAGAAGGAAGTCACGGTGCGATGCGCGTGTCGGCGCATGCGGGAGAAGAGGGCATGCAGCGCCGTCAGGCAGCAGCTGGCTGCTCGGCACCTGCCTGCAGACTTTGACGCCAGCACCGCCGTGCAGCTGCTGGAGTGTGATGCCAAGTGCCATCAGATCAAGGAGGGAAAGAAACAGAAGGCAGAGCAGTCAAATGCAGCGAAAGCAGTTGCTTCCCCCGAGAAGGACACCCCTCCGTCGCCGGCACCAAACAGCCCGGAGGCCCTCTCAATCGACAAGGCCAGCAAAGACAAGCCAGGGAAGAAGCTGTCGCGTGAGGAACGGGTGCGCCAACGAGAGGTGGCTGCCTTGGAGCGAGAGCGCGCGGAGAGGAGGCGAGCCATTCAGAGGAAGCTGGTGGAGTATGGGCCGGTTGCCCTGGTGCTCGCCCTCTTTCTGTGCCTCATCCTGGGTGTCACGTCCTGGATGTTGCAGCCTGATGAGCTCTCTGAGGAGCGCGTCCAAGAAATGGCTGCTGAAAGGCTCCGACGCATGGGCCTGGATTTGTAG
Protein Sequence:
- >estExt_Genemark1.C_40311|Coccomyxa_subellipsoidea_C-169|NF-X1|estExt_Genemark1.C_40311
MAPALPGADLESKPMQAAAEDILRDYTARLGDAAVALEGPGGEVYSVGLSRLREQISSTQACADVCLVCLENIAPDAAVWTCRRSCHVLLHLICAQAWGHQQLQQAAAAARASAEHPDLSLGPVALQPKAAQHVWGCPKCREEYTAAEAPSEYRCMCSAELDPVMAACFCGKASAERRCAASGWSCKKLCGKRLPCGHRCPAICHLGDCKSCSLTGEYACACGAVTERRRCEERVFNCGRVCGKTLGCDRCNCDRVCHSGSCGECPRAGVRTCPCGKVAHSNLPCDEAAPPCGATCGKLLSCGRHHCADRCHPGECSSTCRAISEKSCACGKMQKLVPCAEPFRCERRCTGMRACGRHACKKRCCDGNHPPCDQVCGRRLRCDNHTDPSPCHAGACLPCPLTASVSCACGRTTYSLPCGSEGGAKEPTCDQACGHVCSSSSCHHPPVPPVRAFQPPPAPTSEGIPSARSHKKVFVDYTPPAQQVALAVRAAPAVDSQCPPCTVPVTVHCFGIHSSAQCPCSSAAPFSCSIPCGRPLPCGNHTCSRPCHLLGERQADGLIEGCLPCGLTCQRHRPCGHACLLECHTSDCPPCEVEARRQPGAELQSLLSCGKPCYRKLPECPHHCEAICHLSECPASSSCQKEVTVRCACRRMREKRACSAVRQQLAARHLPADFDASTAVQLLECDAKCHQIKEGKKQKAEQSNAAKAVASPEKDTPPSPAPNSPEALSIDKASKDKPGKKLSREERVRQREVAALERERAERRRAIQRKLVEYGPVALVLALFLCLILGVTSWMLQPDELSEERVQEMAAERLRRMGLDL*