Information report for Tp57577_TGAC_v2_mRNA39012
Gene Details
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Functional Annotation
- Refseq: XP_013449346.1 — AT-rich interactive domain-containing protein 2
- Refseq: XP_024626172.1 — AT-rich interactive domain-containing protein 2
- Refseq: XP_024626173.1 — AT-rich interactive domain-containing protein 2
- TrEMBL: G7L5N9 — G7L5N9_MEDTR; AT-rich interactive domain protein
- STRING: AES80219 — (Medicago truncatula)
- GO:0010628 — Biological Process — positive regulation of gene expression
- GO:0016575 — Biological Process — histone deacetylation
- GO:0048235 — Biological Process — pollen sperm cell differentiation
- GO:0000118 — Cellular Component — histone deacetylase complex
- GO:0048555 — Cellular Component — generative cell nucleus
- GO:0048556 — Cellular Component — microsporocyte nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy021194
- Cajanus cajan: C.cajan_18285, C.cajan_18284
- Glycine max: Glyma.18G234900.3.p, Glyma.18G234900.2.p, Glyma.18G234900.1.p, Glyma.18G234900.4.p, Glyma.09G257700.6.p, Glyma.09G257700.5.p, Glyma.09G257700.4.p, Glyma.09G257700.3.p, Glyma.09G257700.1.p
- Medicago truncatula: Medtr7g078120.1, Medtr7g078120.3, Medtr7g078120.2
- Ziziphus jujuba: XP_015866475.1, XP_015866474.1, XP_015866473.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA39012|Trifolium_pratense|MYB_related|Tp57577_TGAC_v2_mRNA39012
ATGTTGGGTAATGATCAACCTTTGGATTTGTATAAGCTGTTTATGGTGGTGAAGGATAAAGGTGGTTATGATGTTGTTTGTAAGAACAGGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCATCTGTTGAACTTGTTTATAGTAAGTATTTGAGTACTTTAGAGACGCCTTTGAGGAAACTTGTTGATGGTGAGTTTCCTAAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGTGAGCGTTTAATGGAGTTGCAAGCTGAATTCTTCCTGGATGATTATGGTGAGGAAGATGCGGGGGATAGTGTATATGAATGTAGGAGGAAGTTGTGTAATAGAGTGAAGGGCGTGAAGGGTGTCAATCAAGAGTTGAATGCAGTCGAACTCGAAAGGGTATACGACTACATAGACGGGAAGAAGTTGTGTGGTACTAATAGAGTGAAGGATGTGAATCTTGAGTCTAATGCAGCCAAGAAAGTTCATAATAGAGGACTTGTTGGTGTGCATATGCAGGATTGTAAGAAGAGCGAGACTAGTCTCAGAAAGTTGGTTAACCATAATGCTGTAACGGAAATAATGGAAGGGTTTGATGGGGGCAAAATATTAGCAATGGATGATGTATCCGATGCAGCAAACAGCATGCCCGGATTGTCTGATGGAAGCAAGAGTTGTGCTAATGATGACGCTAATGATAGTAGCGACGATGTCTTGGTGTTGGAACCATCTAGTGTTAATAGAGAGAGCTTTGGTCGTAAGAGGAAGAGAGACTCGATGACAGAAATGCTAAGTTGGGTTACTAGCACTGCAAAGAATCCTTGTGATCCAGTGATAGGTTCAATGCCTGAAAAGCCAAAGTGGAAGTCTTACGGTAATCAAGAGACCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAGAGATTTTGGATCAAGCTGTGAAAAACCCAGTTGGCTGGCTCAGAGGATGCATCCTTGTATGTATGATGATAACCTCGGGACAAATTACAATCTTAGACAAAGGATCAAATGTGACAATGGACTTGTAGCTGGAAAATCTTCATCTGCTTTGCAAAGAACACCAAGATCTGATACTGAAAATAGTGCCAAGAAAAAGTTACTTGACTCCGGTGATTCACAATCAATTCTTGATACACCACCCACCGTGAACATCCCTCTCGGGCCAAACCATCAAGTTGAAGTGGCCGAATGGACTGGCACAACTCACGAGAGTGATTCTAAGTGGTTAGGAACCCAAATATGGCCACTAAAAACTGTAAAATCCAAATTTTTGGAATGGGAGCATGTAGGACAGGGTAGACAAGACTCATGTAGTTGCCAAGTACAAGGTTCAGTTGAGTGTGTTCGATTTCATGTTACTGAGAAAAGGTCTAAACTCAAGCTGGAGTTAGGTGTGGCCTTCTACCAGTGGAGTTTAGACAAGGTAGGTGAAGAGGTACGGAGATGGTGGACGCAGCAAGAAGAGAAGAAGTTCAAAGATGCAGTGAAATTAAACCCTGCTTCGCTTGATAGATGTTTCTGGGATAATATTTTCAAATCTTTTCCTAAGAAAAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTGTTTCTTTTGCAGCGCAGAGCATACCAGAACAGGCATACTCCTGATAACATTGACAGTGATGATGAAGAATCAGAATTTACATCATTGAGGGGTATTTTTGGACATAAAAATAATAAATCAAACAGCATCACCATATTATCTCCTAAGAAGCCACAGACAAAGCCACATACAAAAGGAAGATAG
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA39012|Trifolium_pratense|MYB_related|Tp57577_TGAC_v2_mRNA39012
MLGNDQPLDLYKLFMVVKDKGGYDVVCKNRLWDLVGEEYGLGVKVGSSVELVYSKYLSTLETPLRKLVDGEFPKCDLVDDRVKFGERLMELQAEFFLDDYGEEDAGDSVYECRRKLCNRVKGVKGVNQELNAVELERVYDYIDGKKLCGTNRVKDVNLESNAAKKVHNRGLVGVHMQDCKKSETSLRKLVNHNAVTEIMEGFDGGKILAMDDVSDAANSMPGLSDGSKSCANDDANDSSDDVLVLEPSSVNRESFGRKRKRDSMTEMLSWVTSTAKNPCDPVIGSMPEKPKWKSYGNQETWKKVLLFREAAFLKRDFGSSCEKPSWLAQRMHPCMYDDNLGTNYNLRQRIKCDNGLVAGKSSSALQRTPRSDTENSAKKKLLDSGDSQSILDTPPTVNIPLGPNHQVEVAEWTGTTHESDSKWLGTQIWPLKTVKSKFLEWEHVGQGRQDSCSCQVQGSVECVRFHVTEKRSKLKLELGVAFYQWSLDKVGEEVRRWWTQQEEKKFKDAVKLNPASLDRCFWDNIFKSFPKKSRENLVSYYFNVFLLQRRAYQNRHTPDNIDSDDEESEFTSLRGIFGHKNNKSNSITILSPKKPQTKPHTKGR*