Information report for Thhalv10007028m
Gene Details
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Functional Annotation
- Refseq: XP_006418374.1 — protein LHY
- Refseq: XP_006418375.1 — protein LHY
- Refseq: XP_024007807.1 — protein LHY
- Swissprot: Q6R0H1 — LHY_ARATH; Protein LHY
- TrEMBL: E4MW67 — E4MW67_EUTHA; mRNA, clone: RTFL01-03-N03
- TrEMBL: V4L368 — V4L368_EUTSA; Uncharacterized protein
- STRING: XP_006418374.1 — (Eutrema salsugineum)
- GO:0009409 — Biological Process — response to cold
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0042754 — Biological Process — negative regulation of circadian rhythm
- GO:0043433 — Biological Process — negative regulation of sequence-specific DNA binding transcription factor activity
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0048574 — Biological Process — long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G01060.3, AT1G01060.2, AT1G01060.1, AT1G01060.4
- Brassica napus: GSBRNA2T00085393001, BnaC05G0010100ZS
- Brassica oleracea: XP_013587353.1, XP_013587352.1
Sequences
CDS Sequence:
- >Thhalv10007028m|Eutrema_salsugineum|MYB_related|Thhalv10007028m
ATGGATACTAATACATCTGGAGAAGAATTGTTAACTAAGGCTAGAAAGCCATATACAATAACAAAACAGCGAGAACGATGGACAGAGGATGAGCATGATAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCTTGGCAACGAATAGAAGAACATATTGGGACAAAGACTGCTGTTCAGATTAGAAGTCATGCACAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGCTAAAGGCATTCCCGTTTGTCAAGCTCTGGACATAGAAATTCCACCTCCTCGTCCTAAAAGAAAACCCAATACTCCTTATCCTCGGAAACCTGGGAATAACGCTACATCTTCCACTCATGTATCATCAGCAAAACTTGTGTCCTCGGCCTCTTCTTCACATTGTAATCTGCTGGATTTAGAAAAACTGCCATTTGCCGAGAAAACGTCAACTGGAAAAGAAAATCAAGATGATAACTGCTCAGGGGTTTCTACTGTGGACAAGTATCCCTTACCAAAGAAAGCAACTCACACTTTCATGGAAACTGAACTGTCTCTTAAAAAGGCAAGTGCCGATAATGGAACGAGTAAAACCTCAAAAGTGGACAATATGGCTCAAGATGGTCCGGAGAAGAACAAAGACAGAGATGGTGACGGTATGCACAGCGCGCAGAACTACCATTGGCATTTCCCCGCTGATTTTGTAAACGGAAATATGGCAAAATGGCCTCAGTTTCATCCCCCAGGTATGGTATCTCCAGACTTCATGTTTCGTCCTATGGAAGATCGAGTTCACGGGCAATCTAGCTCGCACGTGAATCTTCCTGCTACAACAACAACATCTGCTACTACAACTTCTCAACAACTGTTTCCAGCGTGCCATTCCCAGGATGATTACCGTTCGTTTCTCCAGATTTCTTCTACTTTCTCCAATCTTATTATGTCAACTCTCCTACAGAATCCTGCAGCTCATGCTGCAGCCACATTTGCTGCTTCAGCTTGGCCCTATGCAAATGTCGCCAATTCTGGAGATTCATCAACGCGAATGAGCTCTTCTCCTCCAAGTATAGCTGCCATTGCTGCTGCTACAGTGGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTTCCTGTATGTCCTCCTACTCCACTCACTTGCCTTCCATTACCAACCGTTGCAGTTCCAAATCCAGAAGCGATGGGTATCGCTGAAAATGCTGAGCTACCGCCTGAGAAACAAACCACAGATATGCAAGATCAAAACATGGCTTCAAAATCTCCAGCTTCATCATCTGACGATTCAGAAGAGACTGGAGTAACCAAGCAAAATGTTGACTCAAATACCAATGGGAACACGGAGGAAGTTGTTGCTGGTGCTGCTGCTTTGCATGATTCCCAGAATAAAAAGCCAGTGGATCGCTCATCGTGTGGCTCAAACACTCCTTCGGGGAGTGACGCGGAGACGGACGCATTAGCTAAAATGGATAAAGATAAAGAGGACGTGAAGGAGACAGATGCAAACCAGCCAGGTGCTATTGAGACAAGTAACCGTCGAAGTAAAATCAGAGACAACAACAGTCCAATCACTGATTCATGGAAGGAAGTCTCCCAAGGGGGTCGTATAGCGTTTCAGGCTCTCTTTGCAAGAGAGAGATTGCCTCAAAGCTTCTCACCTCCTCAAGTGGCAGTGAATGTGAATGGAAAACAAGCTGACCCGTCAATGCCATTGGCTCCTCATTTCAAGAGTCAAGATTCTTGTGATGCAGACCAAGAAAGTGTAGTAATGATTGGTGCTGGACCGGGCAAGAGTCTGAAAACGAGGCAAACAGGGTTTAAGCCATACAAGAGATGTTCGATGGAAGTGAAAGAGAGCCAAGTTGGGAACACAAACAATCAAAGTGATGAAAAAGCCTGCAAGAGGCTTCGATTGGAAGGAGAAGCTTCAACATAA
Protein Sequence:
- >Thhalv10007028m|Eutrema_salsugineum|MYB_related|Thhalv10007028m
MDTNTSGEELLTKARKPYTITKQRERWTEDEHDRFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEAKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNATSSTHVSSAKLVSSASSSHCNLLDLEKLPFAEKTSTGKENQDDNCSGVSTVDKYPLPKKATHTFMETELSLKKASADNGTSKTSKVDNMAQDGPEKNKDRDGDGMHSAQNYHWHFPADFVNGNMAKWPQFHPPGMVSPDFMFRPMEDRVHGQSSSHVNLPATTTTSATTTSQQLFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASAWPYANVANSGDSSTRMSSSPPSIAAIAAATVAAATAWWASHGLLPVCPPTPLTCLPLPTVAVPNPEAMGIAENAELPPEKQTTDMQDQNMASKSPASSSDDSEETGVTKQNVDSNTNGNTEEVVAGAAALHDSQNKKPVDRSSCGSNTPSGSDAETDALAKMDKDKEDVKETDANQPGAIETSNRRSKIRDNNSPITDSWKEVSQGGRIAFQALFARERLPQSFSPPQVAVNVNGKQADPSMPLAPHFKSQDSCDADQESVVMIGAGPGKSLKTRQTGFKPYKRCSMEVKESQVGNTNNQSDEKACKRLRLEGEAST*