Information report for Thecc1EG005021t10
Gene Details
|
|
Functional Annotation
- Refseq: XP_017979084.1 — PREDICTED: protein LHY isoform X3
- TrEMBL: A0A061DU09 — A0A061DU09_THECC; Homeodomain-like superfamily protein isoform 5
- STRING: EOX95562 — (Theobroma cacao)
- GO:0009409 — Biological Process — response to cold
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0042754 — Biological Process — negative regulation of circadian rhythm
- GO:0043433 — Biological Process — negative regulation of sequence-specific DNA binding transcription factor activity
- GO:0043496 — Biological Process — regulation of protein homodimerization activity
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0048574 — Biological Process — long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_26408_BGI-A2_v1.0
- Gossypium hirsutum: Gohir.D12G121100, Gh_D12G1185, Gohir.A12G117500, Gohir.A12G117400, Gh_A12G1062, Gh_A12G1061, Gh_D12G1184
Sequences
CDS Sequence:
- >Thecc1EG005021t10|Theobroma_cacao|MYB_related|Thecc1EG005021t10
ATGGACACATACTCCTCTGGAGAAGAACTCGTTATTAAGACTAGGAAGCCTTATACTATTACAAAACAACGTGAAAGATGGACCGAAGAGGAGCATAATAGGTTCCTAGAGGCCTTGAAGCTCTATGGACGAGCTTGGCAACGCATTGAAGAACACATAGGAACAAAGACTGCTGTGCAGATCAGGAGTCATGCTCAAAAGTTCTTTTCAAAGTTGGAGAAGGAGGCACTCGCAAAAGGTGTTCCAATAGGTCAAGCTCTTGACATAGAAATTCCACCTCCACGCCCTAAAAGAAAACCAAGCAACCCTTATCCTCGAAAGACAGGTGCTGCTACCACAGCACAGGTTGGAGCAAAGGATGGAAAATCTGAAACACCATTATCTTCTTTGCGTTGCAAACAAGTATTGGACTTGGAGAAAGAACCACTTCCAGAGAGACCTAATGGAGATGAAAAGCCTATAAATCTGAAAGACAATCAAGATGATAGTTGCTCTGAGGTTGTTACCCTTCTCCATGAAGCAAACTGCTCTTCTGTGTCTTCCGTGAACAAGAATTCTATACCAACATCAGCAGCACTCAGAAACTCTTGCACTTTTAGGGAGTTTGTACCTTCACTAAAAGAGACAATTCAGGATAATGGTACAAGTAAGGCTTCAAACTTGGATAATTCTTGCACTTCACATGAGAAAGCAGCTCAAGGCCAGAAAAAAGATGATGTGGATGGTGGTTTACGTGCAGATGAGACGCAAGCCACTCAAAATTATCCTAGGCATGTTGCTGTGCATGTCTTAGATGGAAGCCTGGGAACAGCTGCATCTGCTACTACTGAACATCAGAATAATGCACCAAGATCTACTCATCAGGCATTTCCAACTTTTCATCCTCCCTTTACACATGTTTGCCCCAATCCAGAGGACTATCGATCATTTCTACATGTCTCCTCCACTTTTTCCAGTCTCATTGCATCTACTTTGTTACAGAATCCGGCTGCTCATGCTGCAGCAAGCTTTGCCGCTACATTTTGGCCATATGCAAATGTTGATAGTTCTGCTGATTCTCCTGCATGCAGCCAAGGAGGTTTTCCATCTAGACAAATGAACCCTGCTCCAAGTATGGCTGCTATTGCTGCTGCAACTGTAGCAGCTGCCACTGCATGGTGGGCTGCCCATGGACTGCTTCCTTTATGTGCTCCTCTGCACACTGGCTTTACCTGTGCTCTTGCATCCGCTGCTGCAGTTCCTCCAATGGATAATGAGCAAGCTCCAGCTACAAAGATGGAAAGAAAAGATAATAATGATCAAGATCTATCCATGCAGGATCAACAACTGGACCCTGAATACTCTGAAGCTTTGCAAGCTCAACATTCAGCATCTAAATCACCTACTTCATCATCATCAGACTCTGAAGCGTGTGGAGATGCAAAAGTAAATACTGGAGTGAAAGCAGCCGATGATGAGAAGGCAGCAGCAGTAACTGAGCCTCAGGATGCAAATAAAACAAAAAACAGAAAACAAGTTGATCGGTCCTCATGTGGTTCCAATACACCTTCAAGTAGTGAGGTGGAGACCGATGTGTTAGAAAAATATGAGAAAGACAAGGAAGATGCAAAAGGAGCTGATGCAAATCATCCACAAGTTGAGTGTTGTAATCGTCGTGGTAGAAGCTGTAGCAACCCGAGTGATTCTTGGAAGGAAGTGTCTGAAGGGGGGCGACTGGCTTTTCAAGCCCTCTTCTCCCGGGAGGTACTGCCACAAAGCTTTTCTCCTCCACACGACGGCAAGAACAAGGGGCAGCAAAAGGACAAAGTAGAGGATGACAAACAAAATTCAGATGAGAAAGACGGAGCTACATCAGCTTTAGACCTCAACAGCCAGACAGTGCGATCTTGTTCTTACCGTCAAGGGGTTGAGAAAAATGGTTTGTCAAGAGGTGAGGACATTGTGGGAGAGGGCCTGCTGACAATTGGACTGGAACATGCAAAGCTTAAGGCCCGCCGAACAGGATTTAAACCGTACAAAAGGTGTTCTGTGGAAGCCAAGGAAAACAAAGTGATGAACGCCGGCAGTCAAGGTGAAGAGAAAGGTCCCAAGAGGATACGCTTGGAAGGGGAAGCTTCAACTTGA
Protein Sequence:
- >Thecc1EG005021t10|Theobroma_cacao|MYB_related|Thecc1EG005021t10
MDTYSSGEELVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTAQVGAKDGKSETPLSSLRCKQVLDLEKEPLPERPNGDEKPINLKDNQDDSCSEVVTLLHEANCSSVSSVNKNSIPTSAALRNSCTFREFVPSLKETIQDNGTSKASNLDNSCTSHEKAAQGQKKDDVDGGLRADETQATQNYPRHVAVHVLDGSLGTAASATTEHQNNAPRSTHQAFPTFHPPFTHVCPNPEDYRSFLHVSSTFSSLIASTLLQNPAAHAAASFAATFWPYANVDSSADSPACSQGGFPSRQMNPAPSMAAIAAATVAAATAWWAAHGLLPLCAPLHTGFTCALASAAAVPPMDNEQAPATKMERKDNNDQDLSMQDQQLDPEYSEALQAQHSASKSPTSSSSDSEACGDAKVNTGVKAADDEKAAAVTEPQDANKTKNRKQVDRSSCGSNTPSSSEVETDVLEKYEKDKEDAKGADANHPQVECCNRRGRSCSNPSDSWKEVSEGGRLAFQALFSREVLPQSFSPPHDGKNKGQQKDKVEDDKQNSDEKDGATSALDLNSQTVRSCSYRQGVEKNGLSRGEDIVGEGLLTIGLEHAKLKARRTGFKPYKRCSVEAKENKVMNAGSQGEEKGPKRIRLEGEAST*