Information report for Sobic.007G047400.1.p
Gene Details
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Functional Annotation
- Refseq: XP_002443890.1 — protein CCA1
- Refseq: XP_021320961.1 — protein CCA1
- Refseq: XP_021320963.1 — protein CCA1
- Refseq: XP_021320964.1 — protein CCA1
- Refseq: XP_021320965.1 — protein CCA1
- Refseq: XP_021320966.1 — protein CCA1
- Refseq: XP_021320967.1 — protein CCA1
- Refseq: XP_021320968.1 — protein CCA1
- Refseq: XP_021320969.1 — protein CCA1
- Refseq: XP_021320970.1 — protein CCA1
- Refseq: XP_021320971.1 — protein CCA1
- Refseq: XP_021320972.1 — protein CCA1
- Refseq: XP_021320973.1 — protein CCA1
- Refseq: XP_021320974.1 — protein CCA1
- Refseq: XP_021320975.1 — protein CCA1
- Refseq: XP_021320976.1 — protein CCA1
- Refseq: XP_021320977.1 — protein CCA1
- Refseq: XP_021320978.1 — protein CCA1
- Refseq: XP_021320979.1 — protein CCA1
- Refseq: XP_021320980.1 — protein CCA1
- TrEMBL: C5YHA4 — C5YHA4_SORBI; Uncharacterized protein
- STRING: Sb07g003870.1 — (Sorghum bicolor)
- GO:0009409 — Biological Process — response to cold
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0042754 — Biological Process — negative regulation of circadian rhythm
- GO:0043433 — Biological Process — negative regulation of sequence-specific DNA binding transcription factor activity
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0048574 — Biological Process — long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.6KG070500.1.p
- Saccharum spontaneum: Sspon.06G0010960-1A
- Setaria italica: Seita.6G055700.1.p, SETIT_013398mg
- Setaria viridis: Sevir.6G053100.1.p, SEVIR_6G053100v2
- Zea mays: GRMZM2G014902_P01, GRMZM2G014902, GRMZM2G474769
Sequences
CDS Sequence:
- >Sobic.007G047400.1.p|Sorghum_bicolor|MYB_related|Sobic.007G047400.1.p
ATGACCTCAACTCCAAGTGACAAAGCGAACAACTGTTGCACCTTTCCCTTCTATTTCTGTTTATTTTTGCCGGATTTGGAGATGGAGGTGAATTCCTCTGGTGAGGAAATGGTGGTCAAGGTAAGAAAGCCATACACAATCACAAAGCAGCGGGAGCGGTGGACAGAGGCTGAGCACAAACGGTTCCTTGAAGCCTTGAAACTTTATGGCAGAGCATGGCAGCGTATAGAAGAGCATGTTGGGACAAAGACGGCCGTGCAGATCAGAAGTCACGCTCAAAAGTTCTTCACCAAGTTGGAAAAGGAAGCTATGACCAATGGTACTTCTCCGGGGCAAGCCCTTGACATTGACATACCTCCACCACGGCCTAAAAGAAAGCCTAACAATCCATATCCTCGAAAAAGTGGTCTCAGCTCTGAGACACCAACCAAAGATTTTCCAAATGACAAGTCAGCAAAACCAAATATGCCCTTGAGCAATGGAAATGTACAAATGGCAGGTGATGCATCTCTTCAGAAATTTCAAAGGAAGGAGTTGTCTGAAAAAGGAAGTTGCTCAGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTGCGTCATTTTCTTCAGTTAACAAAAGCTCTTCAAATCATGGTGCACCCAGGGGGGTCGAGGCAAGTAAAACAGAAATCCGAGATATGACCATCATGGAAAATAATTCTCTTAACCCCAACATGCAAGAGGATGTAAAGGAGATCAGCGATCATGAAATGGAAAGGCTTAATAGTATCCAAATCAGCTCTAAATGTGAACATTCTCACGAGGGATATTTGGATCTCTCAATGCAACAAATGAAGCTAAAGCCAAAATCTGTGGAGACAACATATGTGGACAAACAAACTGCAAGAGCTTCGCACTCCCTAGCGGAGAAAAATGGGACAGCTAGCATTCTGGTCACTGCAACTGAAGGAACTCATTCTGATCAAACAAGTGATCAAGTGGGAATCAATGGAAGCATTAACCCATGCATCCATCCAATGCTTTCTTCAGATCCAAAATTTGATAGCAGTGCCACACCACAGCATTTTCCTCATAATTATGCTGCCTTTGCTCCAATGATGCAGGGCAACTGCAACCAAGATACCTACAGGTCATTCGTCAATATGTCATCCACCTTCTCCAGCATGCTTGTTTCCACGTTGTTGTCAAACCCTGCCATCCATGCAGCTGCCAGGCTCGCAGCATCATACTGGCCAGCAGCTGAAGGTAACACACTTATCGATCCAAATCAAGAAAATCCTGCAGATGATGTTCAAGGAAGGAACATAGGCTCTCCTCCAAGCATGGCTTCTATTGTAGCAGCTACAGTTGCTGCAGCATCTGCATGGTGGGCAACACAAGGTCTTCTCCCTTTCTTCACTCCACCCATGGCTTTTCCATTTGTACCAGCTCCTAGTGCTGCCTTTCCCACAGTTGATGTTCCAAGACCTTCAGAGAAAGACAGAGATTTCCCAGTTGAAAATGCACAGAAGGAATGCCAAGAAGCTCAAAAACAGGGACAATTTGAAGGTTTAAGAGTTGCTGCTTCTTCAGTGTCTGATGGGAGTGGAAAAGGCGAGGTGTCTCTCCACACAGAGTTAAAGATATCTCCTGTCCAGAATGCTGATGCAACACCTACCACAGGAGCTGATACAAGTGATGCATTCAGGAATAAGAAAAAGCAGGATCGCTCTTCATGTGGTTCTAACACACCTTCAAGTAGTGATGTTGATGCAGACAATGTTCCTGAGAAGGAGGACAATGCTAATGAGAAGGTGAAGCAAGCCTCCTGCAGCAACTCTTCAGCTGGTGACACTAACCACCGCAGATTTAGAAGCAGTGGAAGCACTAGTGATTCATGGAAGGAGGTTTCTGAAGAGGGTCGTCTGGCTTTCGATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGACTCGAAGGAGGTTGCCAAGGAGGAAGAAAATGAAGTGACTACAGTGGCAGTTGACCTCAACAAGAACGCCACAAGCATTGATCATGACCTCGACACAATGGATGAGCCAAGGGCTTCCTTTCCCAATGAATTGTCGCACCTGAAGCTGAAATCGCGCCGAACAGGCTTCAAGCCATACAAGAGATGTTCTGTGGAAGCGAAGGAGAATAGGGTGCCGGCTAGTGACGAGGTTGGTACCAAGAGGATTCGTCTTGAGAGCGAAGCATCCACATAA
Protein Sequence:
- >Sobic.007G047400.1.p|Sorghum_bicolor|MYB_related|Sobic.007G047400.1.p
MTSTPSDKANNCCTFPFYFCLFLPDLEMEVNSSGEEMVVKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLEKEAMTNGTSPGQALDIDIPPPRPKRKPNNPYPRKSGLSSETPTKDFPNDKSAKPNMPLSNGNVQMAGDASLQKFQRKELSEKGSCSEVLNLFRDAPSASFSSVNKSSSNHGAPRGVEASKTEIRDMTIMENNSLNPNMQEDVKEISDHEMERLNSIQISSKCEHSHEGYLDLSMQQMKLKPKSVETTYVDKQTARASHSLAEKNGTASILVTATEGTHSDQTSDQVGINGSINPCIHPMLSSDPKFDSSATPQHFPHNYAAFAPMMQGNCNQDTYRSFVNMSSTFSSMLVSTLLSNPAIHAAARLAASYWPAAEGNTLIDPNQENPADDVQGRNIGSPPSMASIVAATVAAASAWWATQGLLPFFTPPMAFPFVPAPSAAFPTVDVPRPSEKDRDFPVENAQKECQEAQKQGQFEGLRVAASSVSDGSGKGEVSLHTELKISPVQNADATPTTGADTSDAFRNKKKQDRSSCGSNTPSSSDVDADNVPEKEDNANEKVKQASCSNSSAGDTNHRRFRSSGSTSDSWKEVSEEGRLAFDALFSREKLPQSFSPPQAEDSKEVAKEEENEVTTVAVDLNKNATSIDHDLDTMDEPRASFPNELSHLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST*