Information report for Sobic.002G320500.1.p
Gene Details
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Functional Annotation
- Refseq: XP_002462936.1 — uncharacterized protein LOC8084050
- TrEMBL: C5XA31 — C5XA31_SORBI; Uncharacterized protein
- STRING: Sb02g034880.1 — (Sorghum bicolor)
- GO:0031627 — Biological Process — telomeric loop formation
- GO:0000784 — Cellular Component — nuclear chromosome, telomeric region
- GO:0003691 — Molecular Function — double-stranded telomeric DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi3g45450.1.p
- Panicum virgatum: Pavir.1NG308200.1.p, Pavir.1KG332000.1.p
- Setaria italica: Seita.1G190100.1.p
- Setaria viridis: Sevir.1G194100.1.p
- Zea mays: GRMZM2G059167_P03, GRMZM2G119133_P01, GRMZM2G059167_P02
Sequences
CDS Sequence:
- >Sobic.002G320500.1.p|Sorghum_bicolor|MYB_related|Sobic.002G320500.1.p
ATGGCAGCTGTGGCGCCGGCGGCGGGGAAGGGGAAGCGAAAGCGCCAACTCTCTGAGGACGACGTCTACCTCCTCCTCCACAGGTACGCTCCGGGGACGATCCTGACGGCGCTGCAGGAGGTGGCGCAGCACGCGGAGGGCCGGCGCATCGACTGGAAGGCGGTGGTTGGGAAGTCGGCCACGGGGATCACCTCCGCCCGCGAGTACCAGATGCTCTGGCGCCACTTCGCCTATCACCACGACCTAGAGGATAGCGTCGACGCCGGCGACCAGCCTCTGGGCGATGACAGTGACCTGGAATTGGAGCTTGAACCCAATCCCATCCCGACCAAGGAAGCTTTATCTGAGGCCTCTGCATTAGCTAAGGCACTAATATCCGGATCTTCACGTGAGCAAGCCTCTGGTCATCGCATTAACTTGGATCCTCCTGTGCTGAACACCCAAAATGAAAAGATAGTACGGGTTCCATCTGAGAAACAGCTTGCTCAGAGTCATTGTATAACAAATGTTACAGGTCCTGTTGCCAATTCAAAACAGTTATCTCATATAGGACCCTCTCCTAGCCATTTGGATCCAAATGGAGCTTCTAAAAAGAGAAAGAAGCCAAAAGCATGGTCTAAAGAGGAGGATGCAGACCTAGCAGCTGGTGTGCAGAAGTATGGTGAAGGAAATTGGGAGGATATTTTGCATAGATGTAACTTTGATAGTACAAGAACGCCTGATCAGTTATCTCAGAGATGGGCACTAAAGCGTCCAGGAGGATCAACCAAGCCTGCTAGCACTAAACATGCTTCTGTTGGCTCAGAGGAAAGATCAGCAGCTCTCAAGGCACTTTCATTGGCTGTCGGTCCTATGCGTAGAACAGGAGCTTATCAACAAAGCATTCAGCATAAGTCTACAGCGTTTGCTCCTAAGATGCCAGAAGTAAGATCTGCAGCAACCCCTTCACCGGCACTGGCGCTGCCAGTCCCAGTCCCAGTTGCAATGCCACTGCGTGTGGCAGCTCAAGTGCAGACTCCGCTTCATCAAGGGCAACAAGCTTCTGTCCAAGCTGCGCCACCAAAATTGTCAAATGCTTCAAATAAGACACGGAAGAAGCAAGCAGCCCAGCCAAGTCCCACCATTGGTCCTTCTTCAATACAAGCAGCAGCAATTGCTGCTGGTGGGCGACTTGCCACAGCCTCAACTGCCGCAAGTTTTTTAAAAGCCGCACAATCTAAGAATGTTGTGCACATAAAATCTCTAGGAGCAACATCTTTGAAATCTTCTGCAAGCTCTAAGGCATCGATTGTGGTTGAGCATGGAACACAACCTGGGGGCTCCCAGCACCTAGAACCTCTAAATCCTAGAGCAGTTCATGGTGTTTCAGGAGTTACTGTAGTTAATCAATCAGGGCCACCTGCTGGGGCACGTTCGTTGGAAACAAAGAAGGCATTGAGTACCACACTAGCACCTGTCCCATGTGAGGAGGATGACTCTGAATTTTGTGTGATTACGATAGATGACTTGTTTCCTGAAGATGCAAAGGAGCCAGAAGTTGTCGATGTAATGCAGCCGGAAACTGTGGATACCAAGGCAAAGCAACCAGAAACCACAGGTCTCAAGGCAAAGCTGCCAGAAAACACAGATCCCAAGGCAATGCAACAAGAAACCATGGACCCCAAATCAAAGCAGCCAGATACATTAGAGGTTGAGATAGTAGATCCCAAAGATAAAGACATGCTAGAATTTGATCAATATGTTGCTTCTCAAGGAGGACACTTAAACACGGATGAGCTGAATAAAAGCAAGTGTACCGACAGTGCTTCCCAAGCCCAAGGTCTTGTTGGCAGCCAGAAGAAGCCACAGAATCTGATTCCTGCGGATGGGAAAGGGAACCCTGTAACTGTGGTTGGGAAAGTTAAGCCTGTAACTGCTGGAGTGGCAGCAACTGGGAAGAAGACTAAAATTCCTGTCTCACATTCAGCAGCAGGAACCCCACGTGGCATTGTTGACACAGTCAATGCCAATGCCCCAAATAAAACACTAGTAAGGAGGGCAGCCACCCCTGTACCTGCTTGTTGCCAAGCGTCACCCCTGAAGCATGCCATGAACACAAAAGGTAACCAAATGACAACCAGCAATGCCACGGTTTTCAGTTGTGGAGTACCAGCCAGCAGCCAGACTAGCAAGGTTGCAGAAGGTGCTAGCAAAGCAAATCCACCATCCAGCAGCAGCCAGGCTAAGCCGAATGGTGTGGCGGTGAACGGTGCTAACAAGGTGGTGAATCCACCGTCCATCAACCAAGCTAGCGCTGCGGTGAACAACACTAACAGGGCTGCGATACCACTGTCCAGCAGCCAGGCTAGTCCGACTATTGACGGTGCCAACAGAGTGGCTAATCCACCACCCAGCAACCAGGCTAGCACAGCTGTGAATGGTGCTGCTAACAAGGGGAATCCGCCAGCAGCAGCCAGGCAATAG
Protein Sequence:
- >Sobic.002G320500.1.p|Sorghum_bicolor|MYB_related|Sobic.002G320500.1.p
MAAVAPAAGKGKRKRQLSEDDVYLLLHRYAPGTILTALQEVAQHAEGRRIDWKAVVGKSATGITSAREYQMLWRHFAYHHDLEDSVDAGDQPLGDDSDLELELEPNPIPTKEALSEASALAKALISGSSREQASGHRINLDPPVLNTQNEKIVRVPSEKQLAQSHCITNVTGPVANSKQLSHIGPSPSHLDPNGASKKRKKPKAWSKEEDADLAAGVQKYGEGNWEDILHRCNFDSTRTPDQLSQRWALKRPGGSTKPASTKHASVGSEERSAALKALSLAVGPMRRTGAYQQSIQHKSTAFAPKMPEVRSAATPSPALALPVPVPVAMPLRVAAQVQTPLHQGQQASVQAAPPKLSNASNKTRKKQAAQPSPTIGPSSIQAAAIAAGGRLATASTAASFLKAAQSKNVVHIKSLGATSLKSSASSKASIVVEHGTQPGGSQHLEPLNPRAVHGVSGVTVVNQSGPPAGARSLETKKALSTTLAPVPCEEDDSEFCVITIDDLFPEDAKEPEVVDVMQPETVDTKAKQPETTGLKAKLPENTDPKAMQQETMDPKSKQPDTLEVEIVDPKDKDMLEFDQYVASQGGHLNTDELNKSKCTDSASQAQGLVGSQKKPQNLIPADGKGNPVTVVGKVKPVTAGVAATGKKTKIPVSHSAAGTPRGIVDTVNANAPNKTLVRRAATPVPACCQASPLKHAMNTKGNQMTTSNATVFSCGVPASSQTSKVAEGASKANPPSSSSQAKPNGVAVNGANKVVNPPSINQASAAVNNTNRAAIPLSSSQASPTIDGANRVANPPPSNQASTAVNGAANKGNPPAAARQ*