Information report for RrC3039_p4
Gene Details
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Functional Annotation
- Refseq: XP_018441165.1 — PREDICTED: protein CCA1 isoform X1
- Swissprot: P92973 — CCA1_ARATH; Protein CCA1
- TrEMBL: A0A3P5Z5J8 — A0A3P5Z5J8_BRACM; Uncharacterized protein
- STRING: Bra004503.1-P — (Brassica rapa)
- GO:0006796 — Biological Process — phosphate-containing compound metabolic process
- GO:0009409 — Biological Process — response to cold
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0010243 — Biological Process — response to organonitrogen compound
- GO:0042754 — Biological Process — negative regulation of circadian rhythm
- GO:0043496 — Biological Process — regulation of protein homodimerization activity
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0048574 — Biological Process — long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0005737 — Cellular Component — cytoplasm
- GO:0000287 — Molecular Function — magnesium ion binding
- GO:0004427 — Molecular Function — inorganic diphosphatase activity
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >RrC3039_p4|Raphanus_raphanistrum|MYB_related|RrC3039_p4
ATGGAGACTAATTCGTCTGGAGAAGATCTGCTTGTTAAGACGAGGAAGCCATATACGATAACAAAGCAACGGGAACGATGGACTGAGGAAGAACATAACCGATTCCTTGATGCCTTGAGGCTTTATGGTAGAGCCTGGCAGAAGATCGAAGAACACGTGGCAACGAAAACTGCTGTGCAGATTAGAAGCCATGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGCTGAAGCTAAAGGTGTACCAGTGGCTCAAGCACTAGACATAGCTATCCCTCCTCCACGCCCTAAACACTCCCCTGGATCAGCAAATGTTTCGCTTCCTCAGATGGAAAATGAATATCCGCAGGAAGACAACTGTTCAGATTGTCTCACTCATCAACACCTCTCTGCTGCATCTTCCATAAAGACATCAAAAGCGAGCACTTTCAGGGAGTTCTTACCTTCACGAGAAGAGGAACAGGGGAATAACAACAAGGAGTCAAACTCAGCCAATTACAGTGAAAATATAGAAGCAGGAGGACCACCTCAGACTTATCCAAGCCATATCCCTATGCTACTTCCACTTGGGAGCTCCATAACAACCTCTCTGTCACATGCTCCTTCTGAGCCAGACGAGACTAGTCATCATCATCATCCCCACACTGTTGCAGGCAATGATCATCATCAGTCGTTTCCTGACCATATTATGTCAAGCCTTTTACAGACACCAGCTCTATATACAGCTGCAACTTTCGCCTCAACGTTTTGGCCTCCTAGTACTGGTGGTGGTGGTGGTGGTGGTGGCACACAAGGGAATCTGGCTGCCATGGCTGCAGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGACTGCTACCTCTCTGTGCTCCTCCTTTTAGTTCAGGTGGTTTGACCTGTCACCCTCCAGCTACTACTTATGGACCTTCTTCCGGTGAAGTAAACGTCACAAAGACAATGGATCAAGAGCACTCCGAGGCGTCAAAGGCTAGATCTTCATTGGAATCAGAGGAGACTAAAAATGGGGGGAGTAAACCAGATTGTCATGAGAATCATCATCCTTGTGCAGCAGCAGCAGCAACTGAGACTGATGCGAAAGGATCAGATGGAGCGAGAGATAGAAAACAAGTTGACAGGTCTTCGTGTGGCTCAAACACTCCCTCGAGTAGTGATGATGTTGAGGCAGATGCTTTGGAGAGGCAAGAGAATGATGGCACCACCAATGATGAAGTGAAAGAAGTGAATGCAGACACTACTAACAATCCACAAACGTCAGAGTCCAATGCACGTCGCGGTAGAGTCAGCTCTAACTTAGCTGATCCATGGAAGTCTGTATCAGATGAGGGTCGAATCGCTTTTCGAGCTCTCTTTGCAAGAGAAGTATTGCCACAGAGTTTCTCATATCAGAGAGAAAACAGAGAGGATGGCCAACAACAAAGATATCCAATGGAGCTTGATCTTAACTCAACAGCTGAACTAACTCCAGCTGATGATGAAGAAGAGAACAGAAACATAGCGTTTTTGGGTGCTTCAAAGCTAAGCAGAGGAAGAACAGATCTCAACGTTAAGTTCAATGGTTTTGGAAAATCGTGTTCTATAACATATGATCATCAACAGATGAGCGAAGAAACATATGAAGAGACGATGGAATCAAACGGATCTCCTCGTCCTGCTCCAAAACTCAACGAGAGGATTCTCTCAACTCTGTCCAAGAGATCTGTAGCTGCACATCCATGGCACGACCTTGAGATCGGTCCTGAAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAGTATGAACTTGACAAAAAGACCGGTCTTATCAAGGAACCAGTGCTTCCAGGATGTTTTCTCCGCGCTAGAGCCATTGGATTAATGCCCATGATTGATCAGGGAGAGATGGACGACAAGATCATAGCGGTCTGTGCTGATGATCCTGAGTACAGACATTTCACTGACATCAAACAACTCGCTCCTCACCGTCTCTCAGAGATCCGTCGTTTCTTCGAAGACTACAAGAAGAACGAGCACAAGGAGGTGGCTGTAAACGATTTCTTGCCATCGGAAAAGGCACATGAAGCAATCCAGTACTCCATGGACCTATACGCTGAGTACATTCTCCATAGCTTGAGGAGATGA
Protein Sequence:
- >RrC3039_p4|Raphanus_raphanistrum|MYB_related|RrC3039_p4
METNSSGEDLLVKTRKPYTITKQRERWTEEEHNRFLDALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAEAKGVPVAQALDIAIPPPRPKHSPGSANVSLPQMENEYPQEDNCSDCLTHQHLSAASSIKTSKASTFREFLPSREEEQGNNNKESNSANYSENIEAGGPPQTYPSHIPMLLPLGSSITTSLSHAPSEPDETSHHHHPHTVAGNDHHQSFPDHIMSSLLQTPALYTAATFASTFWPPSTGGGGGGGGTQGNLAAMAAATVAAASAWWAANGLLPLCAPPFSSGGLTCHPPATTYGPSSGEVNVTKTMDQEHSEASKARSSLESEETKNGGSKPDCHENHHPCAAAAATETDAKGSDGARDRKQVDRSSCGSNTPSSSDDVEADALERQENDGTTNDEVKEVNADTTNNPQTSESNARRGRVSSNLADPWKSVSDEGRIAFRALFAREVLPQSFSYQRENREDGQQQRYPMELDLNSTAELTPADDEEENRNIAFLGASKLSRGRTDLNVKFNGFGKSCSITYDHQQMSEETYEETMESNGSPRPAPKLNERILSTLSKRSVAAHPWHDLEIGPEAPLVFNVVVEITKGSKVKYELDKKTGLIKEPVLPGCFLRARAIGLMPMIDQGEMDDKIIAVCADDPEYRHFTDIKQLAPHRLSEIRRFFEDYKKNEHKEVAVNDFLPSEKAHEAIQYSMDLYAEYILHSLRR