Information report for PSME_00043429-RA
Gene Details
|
|
Functional Annotation
- TrEMBL: M4Q9T9 — M4Q9T9_PICAB; CCA1-like protein
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009734 — Biological Process — auxin-activated signaling pathway
- GO:0010600 — Biological Process — regulation of auxin biosynthetic process
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Brassica napus: BnaC03G0001300ZS, GSBRNA2T00094861001
- Brassica oleracea: XP_013630033.1, XP_013630032.1, XP_013630031.1, Bo3g001090
- Cajanus cajan: C.cajan_36073
- Lactuca sativa: Lsa016517
- Lotus japonicus: Lj6g3v0390140.2, Lj6g3v0390140.1
- Petunia inflata: Peinf101Scf00495g09011.1
- Vitis vinifera: GSVIVT01027456001, VIT_15s0048g02410
- Ziziphus jujuba: XP_015902737.1
Sequences
CDS Sequence:
- >PSME_00043429-RA|Pseudotsuga_menziesii|MYB_related|PSME_00043429-RA
ATGAAGATGTCTTTGCCTTCTAATATTCTTACTCTCAGCGGGGATTCGAATTCGAATTCCAATTCGATCTGTTCTTCAGGAGACGAAATTGCTACAAAGGTGAGAAAACCATATACAATCTCAAAGCAGAGAGAACGGTGGAGCGAAGAAGAGCATCTCAAGTTTCTGGAAGCCCTGAAAATGTATGGGCGAGCCTGGAGGCGAATTGAAGAGCACATAGGTACGAAGACAGCTGTCCAGATACGAAGCCATGCTCAGAAATTCTTCTCTAAGTTGGTAAGGGGATCTTCAGGCAAAGGCGTGTCTTCCACAGAGAGAGCACAGGATATTGAGATTCCGCCACCTCGGCCTAAAAGGAAACCAAGGCACCCTTACCCCCGTAAAGCAGCAGGAACTGCTCATCAGGGAGGGTCGCCAGCAAGTAAAGAAGGGGATGTCTTGCCTTCAGTTGTTTCATCTGTGCCTTTACTGAGCCTGGGAGATGGACCTTGCAAGCGTGCCCGATTTGATCAACACAATGCAAACGAAAGGATTTCAAACAGTAATAACGGGCAAGATGTCAAAATGGAGTCACCTAGAAAGAACAGCACTCCATTGAGTCTCAAGCTTTTTGGCCAAACAATGTTGGTCTCTATTGAAGGGCCAAATACTTCCTCTACTGAACCAGATCTAAGTAACGATCAAGAAGATATTCAGGAATTTGTTTTGGTGCAACAAGAAACCAGTTCTTTGAAGACTAAAGCCAAGAATCAAATATTGGACGATGGAGATGAAATCCTGCACAGATATAGTCAAAATTCTCAAACCACTGCTGCTGTAAACTCAGTCTTATATTCTGGATCTGTATCAACTGCAGACAGGGATTGCAGAGAAAAAACAGACTCAGATGAACAAATTTCTAGTGAATTGGACACCAATTCAAGTTGTGTAACTAGAAATCAAGAATCTCCAAGCATTTTCTCAGGGTACCCAAGGCATGTCCCAGTGCAGTGTGTCGTAGATGGAGCGGTTTCAGAAAATGTGAATGAGGTTGTTAACGTGACACCTTTGGGTCATTCAGCTTTGGCGATGAGCATGCCTGATAACACATCCTCATTGTCCAAGGCTGAGATCATAAATCCATGGCCTTCTACCTTTTCTCCAGTATTTCCTTGGGTTCAGATGCAGCATGGAGACACAGCTGTTGCAGTAGCGACAGTTGCTGCAGCCTCAGCATGGTGGTCCTTGTATGGTGCTGTGCCCTCTCTTCTCCACCCAAGAATGTTTTCAGGAGCCACGGTTCCAGAGAATATTTCATCTGCATTCAAAACTGAAACTGTGATGGGAACCAGAGAACAAAACCAGTCAAATATGACTGAAAGAGAAGGCGAGACCTTATTACGAGGTTCACCATCTGAGAACTACACATCCACTCTTATAGAAGAATCCAATGATGCACAAGGTCATGAAGAAAAACAAAGTTTCCAAACCGGAGAAGAGGACCAAATAATGATAGAGACAGAGTTAGGAAAAGAGAGGTCACAGTGTGCTTCAAACACACCTTCAAGCGATGATTCTGAAATTGATCCTTACTCAGGGACTAATATTCATGAGATTACAAGAAATTGTGTACAGGGTTTCCAATGTAATGGGGGAGGATATGTTCCTGAAGCAGAAGAGGGCTCATCCATAGATGAGGAAGAAATGCGTTACAGCAACAATCTATCAACAAAGCAAGGTGGATTCAACAGGGCAAAAACATGTATTCAGAACAGTAGAAACAATAGTTGTTCCAGAGTTGGTGGCCATTTCAATGATACGTGGAAGGATGTTTCGAGTGAGGGTCGAATTGCATTCAGAGATTTGTTTGCACAAGAGGTTTTGCCTCAGAGCTTTTCCCCTGGAGATGTCAAGTTCTCCAAAATAAATGGCAGCGATTCATTTTTTAGGGATTCAAAGCAAAAGGCAAGCAGAGGTATTGAAGGTGAGTTGTACCCTCGTGTCCAAGGTAGTGGAATCGGCGAGGAACAAACGTACACAGGCAAAGGACATACACAGAGTCCGAAATCTCCTTTTGTCTCAATTTCCAAGGAGAAGGTGCTGGAAGATTCAGACGGTGCTGTCAGCCATGGGCTGCTGGAAGCATCGGCCGTTAATTTTTGCAAAGGCAACAAATTCATTGCTTCAAGCTTTGGAAAGTCAAAGTCTGGTGTGGGTTTTGTCCCATATGAGCGATATGAGCGATGTTCAATGCAAGCAAGCAAAAATGGATTGCAGCTGCGATTCCAGGAAACCAAAAACTGTGAAGATGTTTTAAGAGATGAAAAAAGAATCTGA
Protein Sequence:
- >PSME_00043429-RA|Pseudotsuga_menziesii|MYB_related|PSME_00043429-RA
MKMSLPSNILTLSGDSNSNSNSICSSGDEIATKVRKPYTISKQRERWSEEEHLKFLEALKMYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKLVRGSSGKGVSSTERAQDIEIPPPRPKRKPRHPYPRKAAGTAHQGGSPASKEGDVLPSVVSSVPLLSLGDGPCKRARFDQHNANERISNSNNGQDVKMESPRKNSTPLSLKLFGQTMLVSIEGPNTSSTEPDLSNDQEDIQEFVLVQQETSSLKTKAKNQILDDGDEILHRYSQNSQTTAAVNSVLYSGSVSTADRDCREKTDSDEQISSELDTNSSCVTRNQESPSIFSGYPRHVPVQCVVDGAVSENVNEVVNVTPLGHSALAMSMPDNTSSLSKAEIINPWPSTFSPVFPWVQMQHGDTAVAVATVAAASAWWSLYGAVPSLLHPRMFSGATVPENISSAFKTETVMGTREQNQSNMTEREGETLLRGSPSENYTSTLIEESNDAQGHEEKQSFQTGEEDQIMIETELGKERSQCASNTPSSDDSEIDPYSGTNIHEITRNCVQGFQCNGGGYVPEAEEGSSIDEEEMRYSNNLSTKQGGFNRAKTCIQNSRNNSCSRVGGHFNDTWKDVSSEGRIAFRDLFAQEVLPQSFSPGDVKFSKINGSDSFFRDSKQKASRGIEGELYPRVQGSGIGEEQTYTGKGHTQSPKSPFVSISKEKVLEDSDGAVSHGLLEASAVNFCKGNKFIASSFGKSKSGVGFVPYERYERCSMQASKNGLQLRFQETKNCEDVLRDEKRI