Information report for Potri.009G114900.2
Gene Details
|
|
Functional Annotation
- Refseq: XP_002313800.1 — SWI/SNF complex subunit SWI3D
- Swissprot: Q8VY05 — SWI3D_ARATH; SWI/SNF complex subunit SWI3D
- TrEMBL: B9HRP3 — B9HRP3_POPTR; Uncharacterized protein
- STRING: POPTR_0009s11780.1 — (Populus trichocarpa)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Potri.009G114900.2|Populus_trichocarpa|MYB_related|Potri.009G114900.2
ATGAAAAAATTTAATTCTAATCCAAACACTCTTATTGAAGTGAAAGATTTGTCAGAACTTGAAGTTTCAGACTTAGATGCAAGGCAAGAGGTGCTAGAGTTCTTAGATTATTGGGGATTGATTAACTTTCATCCATTACAATTCGATTCTGCTCCCAATGCTGATGGTGATGAAGCGGCAAAGAAAGATTCATCTCTTGAAAAGTTGTTTTGCTTTGAAGCCATTCAACCATGTCCATCTATTGTTCCTAAACCTAACCTCGCAGCTCCAACTACATCATCTAGATTGTTTCCTGAGTCGGCAATTGCTGAAGAGTTGGCTAAGCTTGAGGGGCCATCTGTTGAGTACCACTGCAATTCTTGTTCAGCTGATTGCTCTCGCAAGCGCTACCATTGCCAGAAGCAGGCAGATTATGATTTATGCGCTGATTGCTTTAATAATGGAAAGTTTGGCTCAAACATGTCCTCGTCTGATTTTATTCTCATGGAGCCTGCTGAGGCTGCTGGTGCAAGTGGTGGAAAGTGGACAGATCAGGAGACTCTACTTCTCCTTGAAGCACTGGAACTTTATAAAGAAAACTGGAATGAGATTGCGGAACATGTTGCCACAAAAACAAAAGCTCAATGTATATTGCACTTTGTTCAAATGCCAATTGAGGATGCCTTTTTTGACGTCACCAATGATATGAATGGCACTTCCAAAGTAACAGTAGATGCTGATGCAACCGTTGATGAGACATCTGGCCCTAAAGATGTCCTCGATACAAGTGAGAGTAAAACAGGTGCTAGTGAAGATCAACCCCTGACTCCTCCAATGGAAGCTTCAAAACCAGAAGATACAAGTGAAGTAAAAGGTAGTCAGGAAAGTACAGAAAATGAGAAAAGCAGTGAGGTGATTAATGGTCCGGAAATTTCCAAATCAGAAGATGCCAGTGGAGTGAAGGTTAGTGAAGAAATGGGTGAAAATGTTGCACTCAGAGCTCTTACAGAAGCATTTGAAGCTGTTGGCTATTCACCAACTCCTGAAAACCGACTTTCATTTTCTGAAGTTGGAAATCCTGTCATGGCTTTGGCATCATTTCTGGCAAGATTGGTGGGACCTAATGTTGCTACTGCTTCAGCCCGCTCTTCTTTGAAATCCTTGTCTAGCAACTATCCTGGCATGCAGCTGGCAGCAAGGCATTGCTTTCTTTTGGAAGATCCACCAGAGGAGAGAAAGAAACCATCTGGCAGTGATTGTGTTGCTACTGAAATGGCTGATCATGATGCTCAAAAGGACAAGCAAGAGGAAAAAAACCAGAAGGAGAATAGCCCTACCTCAGGTTTAGGTGATAGAGACCTGTCAGATGATCACAGAGACAAGAAAGTTGGAGACTCTGTTCCAGAAGAGAAGAAACCACTGGATACATCAAAGGGTGACTCCCCAGAGAAAGTAAATGCTGTAAATGAAGCAGAGACAGCTGTCTCTCACGAGGAAGTTGAACCTTGTAGATCAAAGGAATCTAGCAATTCAGAGTTACCGAAGGACCACACACCTAGTATTGTGAAGGAATCGGATGGGATACCACCCAAGTCAGCGTGTCCACCAAGTTCCTTTAAGGAAACACTGGAAGTATCATCAGCCGAAGAGCATTCTCAGCTTACGGAGGTGGCTAAGGATGTGGATATGGTGTCTGATTTGAAGTCTTCAGAAAAGAATGAGCCTTCTCAATCAGTTGCATCAATGTCAGTTGATGAACACTCTCAAGCTGGTGATGCATCAAAGGATGTAGACATGGTGTCAGATTCTCTGCCTGCAGACAAGGATGGGTCACAGCAACCAGCAAAATCAAATGCAGGAGACCACTCTCAGCCTACAGAGTCAACAGCAGATGTAGACATGTTATCTTCACAGCCTTCAGAAGTGAAGCCTCAGGGTCTGAAGGTTGAAAGTGGAGCCACTTCAGAAGAGGGTCCCAAAGATAGTAAGAAAGAGAAGCTTGACAGTGAAGTGATTAAAGATGACAATAAAATTGATAAAATAAAGCGTGCTGCAGTTTCAGCCCTCTCAGCAGCAGCAGTGAAGGCAAAACTTCTTGCAAACCAGGAAGAGGACCAAATCCGACAACTTGCTGCCTCTTTGATAGAGAAGCAGTTACATAAGTTGGAAATGAAGCTAGCCTTCTTTAATGAAATGGATAGTGTAATAATGAGGGTGAGGGAGCAACTGGACAGGTCAAGGCAGAGACTTTACCAAGAACGAGCTCAGATAATTGCATCCCGACTTGGTTTACCACCTTCATCTAGAGCAGTGCCACCGTCATTACCTGCCAACAGAATTGCAATGAACTTTGCAAATGCATTTCCGAGGCCTCCGATGAGCATGACTGCCCAAAGGCCACCAATATCAAGACCAATGGGTGCATTGGCTCCTACCCCTGACACATTAGTGTCCACAACAACTACAGCAGGAAATTCAATTCGACCTTCTGGTCAGGAAAAACTTTCTTCAGTTGGGACAAAGTAG
Protein Sequence:
- >Potri.009G114900.2|Populus_trichocarpa|MYB_related|Potri.009G114900.2
MKKFNSNPNTLIEVKDLSELEVSDLDARQEVLEFLDYWGLINFHPLQFDSAPNADGDEAAKKDSSLEKLFCFEAIQPCPSIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEYHCNSCSADCSRKRYHCQKQADYDLCADCFNNGKFGSNMSSSDFILMEPAEAAGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFDVTNDMNGTSKVTVDADATVDETSGPKDVLDTSESKTGASEDQPLTPPMEASKPEDTSEVKGSQESTENEKSSEVINGPEISKSEDASGVKVSEEMGENVALRALTEAFEAVGYSPTPENRLSFSEVGNPVMALASFLARLVGPNVATASARSSLKSLSSNYPGMQLAARHCFLLEDPPEERKKPSGSDCVATEMADHDAQKDKQEEKNQKENSPTSGLGDRDLSDDHRDKKVGDSVPEEKKPLDTSKGDSPEKVNAVNEAETAVSHEEVEPCRSKESSNSELPKDHTPSIVKESDGIPPKSACPPSSFKETLEVSSAEEHSQLTEVAKDVDMVSDLKSSEKNEPSQSVASMSVDEHSQAGDASKDVDMVSDSLPADKDGSQQPAKSNAGDHSQPTESTADVDMLSSQPSEVKPQGLKVESGATSEEGPKDSKKEKLDSEVIKDDNKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLHKLEMKLAFFNEMDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPSSRAVPPSLPANRIAMNFANAFPRPPMSMTAQRPPISRPMGALAPTPDTLVSTTTTAGNSIRPSGQEKLSSVGTK*