Information report for Pavir.J599400.2.p
Gene Details
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Functional Annotation
- Refseq: XP_025794429.1 — SWI/SNF complex subunit SWI3D-like isoform X3
- TrEMBL: A0A2S3IIP0 — A0A2S3IIP0_9POAL; Uncharacterized protein
- STRING: Pavir.J23096.1.p — (Panicum virgatum)
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy011934
- Brassica oleracea: Bo1g007270
- Citrullus lanatus: Cla015934
- Hordeum vulgare: MLOC_60197.2, MLOC_60197.1
- Populus trichocarpa: Potri.009G114900.2, Potri.004G153300.3
- Triticum aestivum: Traes_4AL_276CC5E27.1, Traes_4DS_9CC3EA7C9.1, Traes_4BS_270084801.2
Sequences
CDS Sequence:
- >Pavir.J599400.2.p|Panicum_virgatum|MYB_related|Pavir.J599400.2.p
ATGATGAAATTTCATGCCAATCCTCAGTTGCAGCTGGAGTCCAAAGATTTGGCCGAGTTGTCAATCGGGGAGATCGATGCTCGGCAGGAAGTCTTGGAGTTCTTGGATCACTGGGGCTTGATAAATTTTCACCCTTTTCCACCAGCTGGACAAGAGGAGAGTAAGCCTGAGGCGAGCCAAGACAATTCTCATGATGAGGACAAAGCTTCTTTGATCGACAAGTTGTTTAAATTTGAACCGGTTCAATCATATATGATGCCTTTGCCCAAGAAAGAAGATGTGGGAGCTCCACCCCCTCTGCCTAGCTTGTTTCCTGATCCTGTACTTCTTGAAGATGTAGTTGCAGCAGCTGAGCCTTCTGTTGAGTACCACTGCAACTCATGTTCAGTTGATTGCTCGCGGAAGCGCTACCACTGTCGGACCCAGGCAGATTTTGACCTGTGTTGTGATTGCTATAACGAAGGAAAGTTCGATCCAGGCATGGCCAAAACTGATTTCATCCTCATGGATTCTTCAGAAGTTTCAGGTGCTAGTGGTACTAGCTGGACTGATGAGGAGACCTTGCTTCTTTTAGAAGGTTTAGAAATTTTTGGTGGAAAATGGGCCGAGATTGCTGAACATGTAGCTACTAAAACAAAAACGCAATGCATGTTGCACTTTCTTCAAATGCAAATCGAGGACCGCTTCCATGATGCCGAAGATATTAATCAAAATATCCCAGGAAGTACTGAGCAAGTCACAACTGAGAAAGGCATTGCTGAAACATCTGAGAAAATGGACGTTGAAGATAAAGCGGAAGGAAAAGATACTGCAGATGAGAGGGCCTCAGAGAAAATAGAGGGCAACTGTGAAGGAACGAAAACTGAAGATGCAAGTGTTGTTGAAAATAAAGATACTCAGAACTCAGTTAGCAAAGATTCAGCTGCATCCCCGAACACTGAAGAGCCAAAACAATCATCTGATGAGCAACCTACTGCAAAGGAGAATTCTGCTGATGTCGACACTTCTGGTGAAAAACTGTCGAATTTTGCTATTGATATCCTAAAATCTGTGTTCGAGGCTGCTGGTCACAGCCCAGAATACGAAGGTTCTTTTGCTGATGCAGGAAACCCAGTTATGGCACTAGCAGCATTTTTAGCTGGCCTTGTGGAAGATGATAGTGCTACCACTTCCTGCCGTAGTTCCCTAAAAGCTATCTCTGAGGTGTCTCCTGCGCTCCAATTAGCTAGTAGGCACTGTTTTATTCTTGAGGAACCACCAAATGATCTGAAAGACATTTGTGTTAGTGTAAGTAATAAAAATACAGATGGTGATCAAACGAAAGATGAGGAGATCACTAAAAATTCAGTTGATACTGAGAAAAAGGAAATCAATGAGAACAAAGATAATTCTTTATCTGTGAAAAAGCATAATAATTCATCTATCTCACAAAACGACAACCAAGGATCAGACGGTAAGAATGTCTCATGTGATGATTGCCCCATAAAGGAGGCCAAAACCAATAATGCCATGGAGTCAGGTGATTCAACTGCTACTGTGGATAAGAGTGCAACTGACAATACAAAAGGAAGTAATATAGGTGCAAGTAATCCTAAGCAAGTAAATGACAAATCAAATGTCGAGATGGAGGCTCCTGACGATTCATCTTTAAAAGGGAAGGACCGGCTCAATAAGACTAAAGATGCAGTTGCTACACCAGCCACCCAACAGGAAGATAGGCAAAGTGAAACATTGGAAAATGGCAATATGGGAGAACCTAACAACATTGAGAGTGTAGCTGCCAACGAAGAGAAGGGCTCTATAGTTACTGCAAATCAGAATGATTCCATAACTAGGCTCAAACGAGCAGCAGCCACTGCTATATCAGCAGCTGCTGTGAAAGCTAAATTTCTTGGTGATCAGGAGGAATATCACATTCGAAGGTTGACAGCACTGATGATTGAAAGACTGTTCCAAAAAATAGAAGTGAAGATGTCGTTATTTGCTGAGATTGAGCAGGTGGTCCTTCGAACAAGAGAGTACACGGAGAAGACCAGAAAGAAGCTCCTATTGGAGCGAAATGCGATAATTGCAGCTCGCATGGGGGCATTGCCATCTAGGCCAAATCAGCCTGGTGTAGCTGGAAACAGATTACCGCCTGGATATGGCAACCCTGCTGTACGGCCACCAAATGCAATGCCACGACCCAGCAGCTGA
Protein Sequence:
- >Pavir.J599400.2.p|Panicum_virgatum|MYB_related|Pavir.J599400.2.p
MMKFHANPQLQLESKDLAELSIGEIDARQEVLEFLDHWGLINFHPFPPAGQEESKPEASQDNSHDEDKASLIDKLFKFEPVQSYMMPLPKKEDVGAPPPLPSLFPDPVLLEDVVAAAEPSVEYHCNSCSVDCSRKRYHCRTQADFDLCCDCYNEGKFDPGMAKTDFILMDSSEVSGASGTSWTDEETLLLLEGLEIFGGKWAEIAEHVATKTKTQCMLHFLQMQIEDRFHDAEDINQNIPGSTEQVTTEKGIAETSEKMDVEDKAEGKDTADERASEKIEGNCEGTKTEDASVVENKDTQNSVSKDSAASPNTEEPKQSSDEQPTAKENSADVDTSGEKLSNFAIDILKSVFEAAGHSPEYEGSFADAGNPVMALAAFLAGLVEDDSATTSCRSSLKAISEVSPALQLASRHCFILEEPPNDLKDICVSVSNKNTDGDQTKDEEITKNSVDTEKKEINENKDNSLSVKKHNNSSISQNDNQGSDGKNVSCDDCPIKEAKTNNAMESGDSTATVDKSATDNTKGSNIGASNPKQVNDKSNVEMEAPDDSSLKGKDRLNKTKDAVATPATQQEDRQSETLENGNMGEPNNIESVAANEEKGSIVTANQNDSITRLKRAAATAISAAAVKAKFLGDQEEYHIRRLTALMIERLFQKIEVKMSLFAEIEQVVLRTREYTEKTRKKLLLERNAIIAARMGALPSRPNQPGVAGNRLPPGYGNPAVRPPNAMPRPSS*