Information report for Pavir.7NG164300.1.p
Gene Details
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Functional Annotation
- Refseq: XP_025807439.1 — uncharacterized protein LOC112885940 isoform X2
- TrEMBL: A0A3L6STJ3 — A0A3L6STJ3_PANMI; Uncharacterized protein
- STRING: Si020953m — (Setaria italica)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Setaria italica: Seita.3G048100.2.p, Seita.3G048100.1.p, Seita.3G048100.3.p
- Setaria viridis: Sevir.3G048600.7.p, Sevir.3G048600.4.p, Sevir.3G048600.3.p, Sevir.3G048600.2.p, Sevir.3G048600.1.p, Sevir.3G048600.8.p, Sevir.3G048600.6.p, Sevir.3G048600.5.p
- Zea mays: GRMZM2G447745_P01, GRMZM2G089406_P01
Sequences
CDS Sequence:
- >Pavir.7NG164300.1.p|Panicum_virgatum|MYB_related|Pavir.7NG164300.1.p
ATGCCTCCGCCGCCGCCGGATCGGAGGGACTATCTGTACAGGGAGGGCCGCAGGCACGACGGCGGCGGCGGGGGCGAGCCGCTCCTGCCGCCAGCCCCCACGCCGCCCCGCTGGCGGGACTCGCCCTACCACCCTCCGCCGCCGCCCCTGCGGGACCACGCGCGGCCCTCGCCGCGCCGGGCGCCGCCGTCGGCCTCCTCAGAAGGTTACTACCGACAGGGCGGCGGCGCGTACGACCGCTCCTTCCCTGATGAGCCGCCGATAGGCCACACGCCATCGCGCTCAGACCGGTACTGGGCGGAAGACGACGGCGGAGGATGCAAGGGCTTCGGCCGGTACGGTGGCGGCGGCCGGAGGGACGGCCGTGACATGAGGGGGTCTTACCGAAGGTCGCCGTTCAGGGGCTATGGAAGCGACATCTCCAGGAACCATACGGAGCAGCCCCCTCCGCCCCCGCCGAGGAGGTCTCCGTTGAGGTCAGTCGCTGTTCCGATCTGCTACGACCCTCCAGGCAATAGAGTTGACAAGGGGGATAGGGACAACCTCGCGCGGGTGACACCATGGAGGAGGAGGGAGAGCAGATCTGAGATTGCGGATGCTGCTGGGGCTGGACCTGTGTCTGTTGGCCAGACCAATCGGCCGGCGCCCTCAGAGAAGGCTTCAGCTCAGCCTTTGGCTGGGGCAGCTCCTCACGGGGCTGATGAGGAGGCGCCAAGGAAGAAGGCTCGACTTGGATGGGGGCAAGGTTTGGCCAAGTATGAGAAGCAGAAGGTGCAAGGCCCTGCAGATCTTGCTGAAGCTGTTGTTGATGGGAGCCCAGCTGATACTGAACAGAAAGCTGCTTTTCCTGTGCCTCCGCCTGAGCCGCCTGCTGCTCCCGCTCCTCCACCTGAACCTCCTGCTGCGCCTGAGCCTCCTGCTCCTGCGCCTGTGCCGCCTGCTGCACCTGCCTCTGCTGCTGTGTATGTGCCTGCTTCTGTATCTGCATCTTCACCTGCGCGCTGCACATCTCCGGTTGATGCACCATCATCTGCAGCACCATTTTGTACCTCAGGGCCTGAAGATAAATCTTGTGAACAGACGGCAAATACGGTCATAAACCCTACTAAAGATGTCCCTGAAGCTGGTGATAAAACTTTCAACAATGAATTCTCCATTAAGTTAGATCAGCTGGGTGATGATCCTATTAATTCCCTTGCAAACATGCTTGCTGACGTTCTCCAACATGATGATTCTTGCTCTGGGGATTCTAAAGGGCCAACCAGTGCAAGTAAGCTGCTGCTACTGAAGGAAAGTATTTCCAAGGAGATTGAAAAGACCGAACTCGAGATTGATTTGTTGGAAGGTGAACTTAAATCTGTAAATTCTGAGGCCGGAACAGCTGCTGAGGGTTCTCCCACAGGTGTCACATATGCAGAAAATATTTCACCTTCTAGTGGGACATCAAAGGTCCCTGTTAGTGTGGAGATCTCTGAAACATCTCATGTGATGAAAGAACCAGGGGAGCTCATCAGCTCTCCTAAGCCACCTTCGGTGCAGGATGTTGATGCCAAAGGTTCTGATATGATGGAAATTGAGACTGCTCCAGTTCGTAATGCAAAAACAGTTTCTTCAGAAGAGAGTGCTGTATCTCCTGTAGTTGCAGAGGATCCGGCCTGTGCAGCTGCTGTCCTTAGCCCATTGAAAGCTTCTGAAGGAGCTGGGTCTCAAATTGATATGCACAATGACAGGCTGGAAACTTCTCCATGCCATGATAATGCTGAGTCAATCAAAACAGAAGTTAGTGATGACCCACCAGTGAGGCAATGCCCACACCATGATCATAAGTATAGCTTATTTGGGTCAGTTACATCTGCCAATAACAATATAGCCAAAGTAATGAATGAATCGTTATTTAAATCATTGCCTGCTGATACACTTCACCTTGATTTAGTGGCACCGAGTCATCATCTGAGCCAAAGTAAGAATGACCATCGTATCAAAGAAAGGCTTGGAGTATTTAAAAATAGGCTGAGGTTGAAAGAGCAGATTCTTACCTTAAAGTTCAAGGCATATCGTCACTTGTGGAAAGAGGATCTGCGATTGCTTTCTGCGAAGAAACAACGCTCAAAGTCTAACAAGCGCATTGATCAGAGCAACCGGGCATCACATATTGGATCTCAGAGGCAACGCTCCTCCAACCGTTCACGATTGGCCATGCCTGCTGGTAATTTAAGTATATTCTTAACTCCAGAAATGTCAGATGTTGCAAGCAAGTTGTTTTCAGAATTTCAGATTAAGCGCTGCAGAAACTACCTGAAAATGCCAGCGCTGATTATAGATGAGAGAGAGAAGGAATGCTTGAGGTTTGCCAGCAAGAATAGCATGGTCGATGATCCTGTTTTAGTCGAGAAGGAGCGGGTAATGATAAATCCATGGACACAAGAAGAAAAGGAAATATTTATGGAGATGCTTGCTAAATTTGGCAAGGATTTCTCCAAAATCTCCAGTCTCCTTGTGCACAAAACTACTGCTGATTGTGTGGAGTTCTACTACAAGCATCATAAATCAGATAGTTTCCGAGAAGTTAAGAAACTTTTGGACCTTCGACAACATCAACCCACTGGCAATTTTCTGGGAGCGAAATCTGGAAAGAAATGGAATCCTGAGGCAAACGCTGCTAGTCTTGATATGCTTGGAGTAGCATCAGTAGTAGCAGCCCATGGCCTTGAATATGCAAACAGAGTGGAGAAAGTCTCTGCGAAATCCCTCATCCGTGCTGCATATGGGTCCAATGCTTCTTTTGCAGCCAAAAAATCTTCTGACAGGGAATGCATTAATAATGCACCGTTGAATGAGAGAGAATCTGTTGCTGCTGATGTATTAGCAGGCATATGTGGCACTCTCTCTCCTGAGGGAATGGGCTCATGCATCACTAGTTCTGCTGATCTTGGTAAGATTAGCATGACAAGAATGGAGCATATCTTAGCCCCCGAATTTGACAGAAGCATTGATGAGGAAGATTCACTGTCAGATGAAGAGTGTGAAGTTGATCCTGTTGATTGGAATGATAATGAGAAGTCAATTTTCATTGAGGCTATGAACAACTACGGAAAGGACTTCGCTAGGATTTCATCATGTGTGAAAAGCAAGTCGTATGAGCAGTGCAAAGTATTCTTCAGCAAGGCTCGGAAATCACTTGGTTTGGATTTGATCCATCAAGGAGCAGCTGATGTTAGTGTGCCAACTAGTGATACAAATGGAGGGAGGAGTGATACTGATGAGGCCTGTGCTGCTGAAATGGATTCAGCTATCTGTAGCACACAGTCATGTTCAAAAATTGAGATGGTATGCCCTACTGAAAAAGACATTGGAGGTATAATCACAAAGCAGCCAGAACTTAATATATCAAATGGGTTTGATGTTGTGAACAGTAAAACTGGGGAAGATGAGAAGAAAACTGAAAAAAAATGTGGTATTGTTGATCATGAAAGGTTCGATGAAGGTACTCATCAAGCAGCATGTGGTCCTATTGACATCAATTGCCCAGAAAGCACAGAGAAGCTGCATGGAAAAGATGATGTCATTGACCAAGTAAATATGCACAACAATAGTGCCATCAGCTCCTCGACTGAGCAAGCAAAGGCAGTGCCCTCGGAAGTCCAATCCTGTTTAGATTCTGTTGAGGTACTTCATCAAACAAGCAAATCCCCTTTGGGGACTGGCACTGATGCTTCCCAGATGGAAGAATGTTCCAACCATGCTCTTGACGATAAGCTAATGAAAGCTGGAAATTCTGGTGCCTCATCTTGCATAGCTTCCGATAAATGTATTAGGGACAATGTTCACTTTGCAAACACCATTAGTCCTACATTCGCTTCAAGTTATAAGCATTCTGTGCCAGCGGATATGCCCCCGACAAAACCAAAGCCATTGGTTACTCCCCTTACCCCAAAGGACTTAATGCCTGTACAGTTCAGTTCTGCAGTTCCTGATCCTACCGCAATTCGTTTTGATGGCATAGCTTCAATAACAATGCCCAATTTTGAGGACAGTGGTAACAGAGTCAGCAGTTCTTTAGGGCCCAAAGATATGAGCAAGTACCCAGCTTTTAAAGACCCAACCGGTAATCAGCATGTCACATTGTTTCGTAATGTTGATGGTTACACGAACCATCTGACAACTGAATTACCAATTTTTTCTGAAAGAACTGCAAGTGGCACTGTGAGTACTTCTCAGACTGATCGGTTCACTCTAACAAAATTCCAGAATGGCAGGTCCAGCAGTTTGGGCCTTCCAAACACTTCCGATGGGATTCAATGGGCCAGAAAACACGAAGAAGTACTGCAAGGTTCTCTGAGGTCATGCTCTCACAATACAAGTTCTGATGGTGATGAGCAACAAAAGCGGCCTGGTGATGTCAAGTTATTTGGGAAGATTCTCAGTCATCAATCATCCTTGCAAAGTTCTGTCTCATCATGTAATGGTAACAAGAGCAAGCCTCCCTCGCCAAAGGTTGACACGTCATCTGTGAGATTGTCGAACAATCCAAGGGATCGTGTGGTTTGTTCTTCCAGGCCTGGCTTCACTCATTTGGGTCTGGAGGAAAGAACAGCTCGGAGCTATGGCCATTTGGATGGAAGCACAACACAGCCAGAGCCACTGCTAATGATGGCGAAGTGCCAGAGCTTAGCCGGTGTACCGTTTTACTCGGCTAAAAATGGCACTGTTAGTGTGTTTTCAGATTATCAACAGCCTTCGATTCAGCCGCATCAGTCAGATCCAAAACGGCTGGAAAGGTTTTCTGATCCTCAGAAGCGCAACGGAATGGAGTTCATCTCGGGTTTCCAGCAGCCTGGTAAAATCTCACGGTTTGGGGGTGCTGGTATCCTTGTAAGCGGGGTCTCAGACCCTGTGGCTGCTCTCAAGGCCCAGTATGGTCCCAGTTCTAAGGTTATGGGCAGTGACGTGGATCCTTGGAAGGACATAGGAAGCAGCTCCATACCCTTTGCTAGCTTGACCTGTCAACAGTGGCACAGTGCTGTAGGTTCGCTAGAGGTGCTGTCCACAGGCTGA
Protein Sequence:
- >Pavir.7NG164300.1.p|Panicum_virgatum|MYB_related|Pavir.7NG164300.1.p
MPPPPPDRRDYLYREGRRHDGGGGGEPLLPPAPTPPRWRDSPYHPPPPPLRDHARPSPRRAPPSASSEGYYRQGGGAYDRSFPDEPPIGHTPSRSDRYWAEDDGGGCKGFGRYGGGGRRDGRDMRGSYRRSPFRGYGSDISRNHTEQPPPPPPRRSPLRSVAVPICYDPPGNRVDKGDRDNLARVTPWRRRESRSEIADAAGAGPVSVGQTNRPAPSEKASAQPLAGAAPHGADEEAPRKKARLGWGQGLAKYEKQKVQGPADLAEAVVDGSPADTEQKAAFPVPPPEPPAAPAPPPEPPAAPEPPAPAPVPPAAPASAAVYVPASVSASSPARCTSPVDAPSSAAPFCTSGPEDKSCEQTANTVINPTKDVPEAGDKTFNNEFSIKLDQLGDDPINSLANMLADVLQHDDSCSGDSKGPTSASKLLLLKESISKEIEKTELEIDLLEGELKSVNSEAGTAAEGSPTGVTYAENISPSSGTSKVPVSVEISETSHVMKEPGELISSPKPPSVQDVDAKGSDMMEIETAPVRNAKTVSSEESAVSPVVAEDPACAAAVLSPLKASEGAGSQIDMHNDRLETSPCHDNAESIKTEVSDDPPVRQCPHHDHKYSLFGSVTSANNNIAKVMNESLFKSLPADTLHLDLVAPSHHLSQSKNDHRIKERLGVFKNRLRLKEQILTLKFKAYRHLWKEDLRLLSAKKQRSKSNKRIDQSNRASHIGSQRQRSSNRSRLAMPAGNLSIFLTPEMSDVASKLFSEFQIKRCRNYLKMPALIIDEREKECLRFASKNSMVDDPVLVEKERVMINPWTQEEKEIFMEMLAKFGKDFSKISSLLVHKTTADCVEFYYKHHKSDSFREVKKLLDLRQHQPTGNFLGAKSGKKWNPEANAASLDMLGVASVVAAHGLEYANRVEKVSAKSLIRAAYGSNASFAAKKSSDRECINNAPLNERESVAADVLAGICGTLSPEGMGSCITSSADLGKISMTRMEHILAPEFDRSIDEEDSLSDEECEVDPVDWNDNEKSIFIEAMNNYGKDFARISSCVKSKSYEQCKVFFSKARKSLGLDLIHQGAADVSVPTSDTNGGRSDTDEACAAEMDSAICSTQSCSKIEMVCPTEKDIGGIITKQPELNISNGFDVVNSKTGEDEKKTEKKCGIVDHERFDEGTHQAACGPIDINCPESTEKLHGKDDVIDQVNMHNNSAISSSTEQAKAVPSEVQSCLDSVEVLHQTSKSPLGTGTDASQMEECSNHALDDKLMKAGNSGASSCIASDKCIRDNVHFANTISPTFASSYKHSVPADMPPTKPKPLVTPLTPKDLMPVQFSSAVPDPTAIRFDGIASITMPNFEDSGNRVSSSLGPKDMSKYPAFKDPTGNQHVTLFRNVDGYTNHLTTELPIFSERTASGTVSTSQTDRFTLTKFQNGRSSSLGLPNTSDGIQWARKHEEVLQGSLRSCSHNTSSDGDEQQKRPGDVKLFGKILSHQSSLQSSVSSCNGNKSKPPSPKVDTSSVRLSNNPRDRVVCSSRPGFTHLGLEERTARSYGHLDGSTTQPEPLLMMAKCQSLAGVPFYSAKNGTVSVFSDYQQPSIQPHQSDPKRLERFSDPQKRNGMEFISGFQQPGKISRFGGAGILVSGVSDPVAALKAQYGPSSKVMGSDVDPWKDIGSSSIPFASLTCQQWHSAVGSLEVLSTG*