Gene Details:
- Gene ID: orange1.1g024081m
- Gene Name: CISIN_1g024128mg
- Gene Family: MYB_related Family
- Description: MYB_related Family protein
- Species: Citrus sinensis
- Source: MYB_related family gene from PlantTFDB
Protein Features:
- Gene3D: G3DSA:4.10.60.10
- PROSITE profile: PS51294
- SuperFamily: SSF46689
- TIGRFAMs: TIGR01557
- SMART: SM00717
- Gene3D: G3DSA:1.10.10.60
- Pfam: PF00249
- InterPro: IPR001878 IPR017930 IPR009057 IPR006447 IPR001005
Annotation Proteins:
- Refseq: XP_006451517.1 — single myb histone 4
- Refseq: XP_006475491.1 — single myb histone 4-like
- Swissprot: F4IEY4 — TRB5_ARATH; Telomere repeat-binding factor 5
- TrEMBL: A0A067EH62 — A0A067EH62_CITSI; Uncharacterized protein
- STRING: XP_006475491.1 — (Citrus sinensis)
- STRING: XP_006451517.1 — (Citrus clementina)
Gene Ontology:
- GO:0006334 — Biological Process — nucleosome assembly
- GO:0000786 — Cellular Component — nucleosome
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction:
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature:
- A novel leaf-specific myb-related protein with a single binding repeat. DOI: 10.1016/s0378-1119(96)00521-5 ; PMID: 8996094
Sequences:
CDS Sequence:
- >orange1.1g024081m|Citrus_sinensis|MYB_related|orange1.1g024081m
ATGGGGAATCCGAAGCAGAAGTGGACAGCGGAGGAGGAAGAGGCACTAAGAGCTGGAGTAGCCAAACATGGCACAGGCAAATGGAAGAACATACAAAGAGACCCCGAGTTTAATCCCTTCCTCTTCTCCCGCTCCAATATTGATCTCAAGGATAAATGGCGGAATATGAGTGTTAGCGCACCTCGAGAAAAATCAAGGACACTGAAACCAAAAGCTGGCTCAGATGCTCCTGCTGTGCCCTTGTCCACTCCACAGACTTCTGCTCTTCCTGCTGCAGTTCCAATTGATGCATCAGCAGATCCAATCACTGACGAGTCTGCAAGAAGCTCTGCTCCAAAGTACAATGCATTGATTTTTGAAGCAATTTCTGCATTGAAAGAGCCCAATGGATCTGACGTTTCAGCAATTCTCAGCTATATTGAGCAAAGGCTTGAGGTGCCTCCAAATTTTAGGAGGCTGTTAAGTTCGAGGCTGAGAAGGTTGGTTGCACAAGAAAAACTTGAAAAGGTCCAAAATTGCTTTAAGGTAAAAGAAGATGCCTCATTAGGAACAAAAACGCCAAACCCAAAACAGAAGGATACCCGACCTAAGCTGTTGCATAGCACTAACGACGTAAGCCCTGCTGATACAGTACAAGAAGCAGCTGCTGCTGCAGCTGGCCAGGTTGCTGATGCCGAAAACAAGTCTTTTGTGGCAGCTGAAGCAGTTAAAGAGGCAGAGAGGGTTTCAAGAATGGCTGAAGATACAGATTCTCTGCTACAGCTAGCCAAAGAGATTTTTGAGAGATGTTCACGTGGTGAAATTGTTGTCGTGGCATAG
Protein Sequence:
- >orange1.1g024081m|Citrus_sinensis|MYB_related|orange1.1g024081m
MGNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAPREKSRTLKPKAGSDAPAVPLSTPQTSALPAAVPIDASADPITDESARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQNCFKVKEDASLGTKTPNPKQKDTRPKLLHSTNDVSPADTVQEAAAAAAGQVADAENKSFVAAEAVKEAERVSRMAEDTDSLLQLAKEIFERCSRGEIVVVA*