Information report for LPERR04G00260.2
Gene Details
|
|
Functional Annotation
- Refseq: XP_015633469.1 — SWI/SNF complex subunit SWI3D isoform X1
- TrEMBL: A0A0D9W1T7 — A0A0D9W1T7_9ORYZ; Uncharacterized protein
- STRING: OS04T0110300-02 — (Oryza sativa)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy011934
- Brassica oleracea: Bo1g007270
- Citrullus lanatus: Cla015934
- Glycine max: Glyma.11G118900.2.p
- Hordeum vulgare: MLOC_60197.2, MLOC_60197.1
- Panicum virgatum: Pavir.J599400.2.p, Pavir.7KG076500.1.p, Pavir.7KG076500.2.p
- Populus trichocarpa: Potri.009G114900.2, Potri.004G153300.3
- Triticum aestivum: Traes_4DS_9CC3EA7C9.1, Traes_4AL_276CC5E27.1, Traes_4BS_270084801.2
Sequences
CDS Sequence:
- >LPERR04G00260.2|Leersia_perrieri|MYB_related|LPERR04G00260.2
ATGAAGAAATTTCATGCTAATCCTCAAATGCATTTGGAGTTCAAGGATTTATCTGAGTTGCCAGATGGGGAGATGGATGCTCGGTTGGAAGTCTTGGAGTTCTTGTCACACTGGGGTCTGATCAATTTCCACCCTTTTCCACCAGCTGGACAGGGGTTGAGTGAGCTGGTTGAGAGCATAACAAGTGCTGATACAGAGGGGAAAATTTCTGTAGTGGAGAAATTATTTCAGTTTGAAACAATGCAGTCATATCTTATTCCTGCTCCTAACCAACCAGACGTGGCAGCTCCAATTTATGCCCCTAGCTTGCTTTCTGAGCCTACTCTAGCTGAAGATTTTATTACCCAAGTTGAGTCTTCTGTTGAGTACCACTGCAACTCTTGTTCAGTTGATTGCTCAAGGAAACGCTACCATTGCAGAACTCAGGCAGACTTCGACTTGTGTTGTGACTGTTATGACGAAGGAAAGCTGGATTCAGGCATGTCACAAACTGATTTCATCCTTATGGAATCTGCAGACATTCCAGGCTTTGGTAGTACTAGCTGGACTGACCAGGAGACATTGCTTCTTCTGGAAGCTTTAGAAATTTTCCAGGCAAAATGGGGTGACATTGCTGAGCATGTTGCTACAAAAACCAAAGCACAGTGCATGCTACACTTCCTTCAAATGCCAATTATGGACTCGTTTCTGCATGATGGAGATGCTAATGAAACATCTCATGAAACTGCAGAGAAGGTCTCAGCAGAACAAGGTACTTCTCGTGTAACTGAGAAAACGGAAGTAGGCAAAGCAGAAGGAACAAAAACCAATAATGGAAAAGCTGCTGCAAAAACAAGATTGAATTTGACAGAAACAGGAGGAAACCTAGACGATCATGTTGTTGCAAATACCAATACCAACTGTTCAATTGATATCATTGTGGATGCATCTGGCAAGACTGGTGAATCAAATAGATCTTCAGATACTGAACCTACTAAGAAAGAAACTTCTGGGGAAAATACATCAAATTTTGTTGATAATGTCCTGAAAAATGCTTTTGAAGCTGTTGGTCACATTCCAAACAAAGAGGACTTGGGTTCATTTACTGAAGCAGGAAATCCTGTCATGGCACTGGCAGCATTTCTGTCTGGCCTTGTGGATCATGACGATGCGACTATGTTGTGCTGTAGCTCACTGAAAGCTATATCTGATATGTCTCCTGCTCTTCAATTGGCAACAATGCACTGTTTTATTCTTCAGGATCCACCAAATGACCTCAAAGATCTGCCGGTCAGCTCTGCAAACACAGATGGTGGGCAACAAAAAGACAAGGATGCTATTTCAAATCCAAATGTTACTGACAAAGATGAAAATTTAAAAGAAGGGTCCGCTTTATCTGTGGAAGAGCAAAGTACTACATCGACTTCATCGAAAAACACCAGGGAATTATCTAACACAAAGGAATCTAAGAATGGATCTTCCCAAGTGGATCCCAAATCCACTGGTGCGAACGATTATGAAAATCCAATTTGTGAGGTGGTAAAGAGTGCATCTGATAATATAAGAGGACACAGTTCCACTTCGCTTCATGTCAGTCTGAATAATAGAAATGAACCTTGTTCAATATCTTCCCAAGAGGCCAGTGCAGGAAGCACAAAGGACACAAGTGAGATCGAACATGAAGTCACTGACTTATCTACTGTACAGCAGCATGAGTCCATTCGAACGAGTTTGAAAAATGGCAACATACAAGATCCTAACAGTATTAAGGACATGGTTGCTGATGGCCTTTCCATACAAAGGCTACAGCAGGCAGCAGCTACTGCTATCTCAGCAGCGGCTGTGAAGGCTAAGCTCCTGGCAAAGCAGGAGGAATATGAAATCCAGCAACTAGCTGCACTTGTGATTGATAAGCAGTTACACAAGATGCAAGCTAAAATGGCATTTTTCACTGAGGTAGAGAATTTGGTCTTGCAAGCGAGATCACACACCGAGAAAACTCGGAAGAAGCTTCTAATGGACAGGAATGCTATAATCGCTTCTCGGATGGCAGCAATGCCACCTAGACCACCACCAAACCAACCTGGGATGCCTGGGAGCAGATTGCCAGTAGGGTATGGTGTAAATCAGCAGCATCTGAGGCGATCTTGA
Protein Sequence:
- >LPERR04G00260.2|Leersia_perrieri|MYB_related|LPERR04G00260.2
MKKFHANPQMHLEFKDLSELPDGEMDARLEVLEFLSHWGLINFHPFPPAGQGLSELVESITSADTEGKISVVEKLFQFETMQSYLIPAPNQPDVAAPIYAPSLLSEPTLAEDFITQVESSVEYHCNSCSVDCSRKRYHCRTQADFDLCCDCYDEGKLDSGMSQTDFILMESADIPGFGSTSWTDQETLLLLEALEIFQAKWGDIAEHVATKTKAQCMLHFLQMPIMDSFLHDGDANETSHETAEKVSAEQGTSRVTEKTEVGKAEGTKTNNGKAAAKTRLNLTETGGNLDDHVVANTNTNCSIDIIVDASGKTGESNRSSDTEPTKKETSGENTSNFVDNVLKNAFEAVGHIPNKEDLGSFTEAGNPVMALAAFLSGLVDHDDATMLCCSSLKAISDMSPALQLATMHCFILQDPPNDLKDLPVSSANTDGGQQKDKDAISNPNVTDKDENLKEGSALSVEEQSTTSTSSKNTRELSNTKESKNGSSQVDPKSTGANDYENPICEVVKSASDNIRGHSSTSLHVSLNNRNEPCSISSQEASAGSTKDTSEIEHEVTDLSTVQQHESIRTSLKNGNIQDPNSIKDMVADGLSIQRLQQAAATAISAAAVKAKLLAKQEEYEIQQLAALVIDKQLHKMQAKMAFFTEVENLVLQARSHTEKTRKKLLMDRNAIIASRMAAMPPRPPPNQPGMPGSRLPVGYGVNQQHLRRS