Information report for Genemark1.1008_g
Gene Details
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Functional Annotation
- Refseq: XP_005651061.1 — hypothetical protein COCSUDRAFT_59046
- TrEMBL: I0Z798 — I0Z798_COCSC; Uncharacterized protein
- STRING: XP_005651061.1 — (Coccomyxa subellipsoidea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0032922 — Biological Process — circadian regulation of gene expression
- GO:0043966 — Biological Process — histone H3 acetylation
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0048573 — Biological Process — photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy003773
- Brassica napus: GSBRNA2T00080698001
- Brassica rapa: XP_009146914.1, Bra029778
- Cicer arietinum: XP_004510747.1
- Cucumis melo: MELO3C006934P2
- Glycine max: Glyma.19G178000.1.p, Glyma.19G178000
- Lotus japonicus: Lj5g3v0615930.3, Lj5g3v0615930.2, Lj5g3v0615930.1
- Manihot esculenta: MANES_09G079800, Manes.09G079800.1.p, Manes.14G022100.2.p
- Populus trichocarpa: Potri.002G163100.1, Potri.014G089300.1
- Prunus avium: Pav_sc0003845.1_g090.1.mk
- Prunus mume: XP_008242131.1, XP_008232985.1
- Prunus persica: Prupe.2G176200.2.p, Prupe.2G176200.1.p
- Ziziphus jujuba: XP_015899607.1, XP_015899606.1
Sequences
CDS Sequence:
- >Genemark1.1008_g|Coccomyxa_subellipsoidea_C-169|MYB_related|Genemark1.1008_g
ATGGCGGACGCACCGCCCACACGCAAGCCTTACAGGATAACCAAGCAGCGCGAGAAATGGTCCGACAGCGAGCACCAACGCTTCACGGAGGCGGTCGAAAAGTACGGCCGCGACTGGAAGATGATTGTGGAGCACGTCGGGACGCGCTCAGTAGCCCAGAGCAGTTTAGGCCAGCTTCGCGATGACGTTCTGCCGTCCTGCGGAGGCCCTGTGCCGGTGCGGAGCCACGCACAGAAGTTCTTCCTGAAGCTGGAGAAGTCGGGCCAGGCGGGCGTGGTGCCACCGCCGAGGCCGAAGAAGCGCGCGGCCAAGCCGTACCCGGTGCAGGACCGCGGCGAGGAGCGGCGCAAGTCCAAGCGCAGCCGCAGCAGCGCCTCCAACAGCAGCGCCCACTCGCAGCCGTCCCAGACCAGAGGGGCAGCAGTCTCCCCCAGCACCTCGCCCTCCAACGGGCGCTCCTCGCCCCGCAGCGCCGCAACTGCCGCCACGCTGCCCGTCAGCTCGCGACGGCCCTTGCGCTCCAGCCGGGCCACTCGCAGCCTCGCTAACGCGGCGGCGTCCACCAAGGGGTCCAGCCAGGACCTGGAGGGCAATGGCAGCAATATTGCGTCGGCAAATGAGAGCAACAACGACCACAGTGAGGGCCCGTCTGCAACCCAGGAGAACTCTGGGTTGTCCACAGGAGGCGCAGATCTGGACCTGCAGTTCAGCGCAGACCCGATGAGCCTTGAGGCACCAGAGGCTGCGCCACGCCCACGCGAAAAAAGCGAGACGCCAGACTATGGGAAGCTCTATTCCATTGTGAACGTCCTCTTCGACTCTGGTGGAGCTGCAAACGATGAGAAGAACCACAAGCAGATGATGGAGCAGCTCGAACCGGGGCAGCGGAAGGAGCTGCTGGCCATGATGGACCAGCTGACAGGCAACCTGCGCAGCACATGCCCGCCCGCGCAGAAGCTGGAGCAGCTCAAGGCCGAGCTCAAGGCCAAGAGCCAGTCGCCCACGCCGCCGCAGCAGCCGCCGCCGACGCCAATACCGGCTCCGGCGCGCGCATCGCGACTGGACCACGCGGCGTCGATGCCCCTCATGCCCTGCACCGCCTGCCTGCCCATGCCCCAGACCGTGTCGGAGGAGCCCCTGGCGCTCATGCAGCCCCTGCCGGGCTCCCAGGGCACGGCGCTGCTGCAGCCGCTGCCCTGCGCGCAGCAGTGCTCCTTCTCGCCCGTGCTCCCGCCACCGCTCGCGTCCGACGCCTGCGAGCTGGTACACTGCGGCTCCGGCGCCGGCAGCAGCCTCGGCAGCGGCATCGGATGCGGCAGCGTGGCTGCACTGCCGGGCTTGGCGGCCGACGCGGTGCTGCTGCAGCAGAGCGAGCCGGAGCAGAGCATAGCGGAGCAGCTGCTGGTGGATAATAGCGGGGAAGGCGCGGGCATGGGGCAGGCCATGTTTGACATCCAGCAGGGCAGCGGGCTGGAGGAGGTGGGGCTGCAGCTGCCCAAGAGTTCCTCGCTGGGCGGCAACACCCCCCTGGACACCTGCCTTGCCCAGCTGGAGAGCGGCACCGATCCCACAGTGCCGGAGTCTGATGATTTCTTGGACAGCTGGAAGATTGGCAGCTCGGACCCAGTGTGGCAGACGTTGGAGATGCAGCAACTTTCCCCAACCGCACCCACTTCGCCCAGTTCATTCACGCGCGACACCAACGGAAGCATGTTTGCCTTATGA
Protein Sequence:
- >Genemark1.1008_g|Coccomyxa_subellipsoidea_C-169|MYB_related|Genemark1.1008_g
MADAPPTRKPYRITKQREKWSDSEHQRFTEAVEKYGRDWKMIVEHVGTRSVAQSSLGQLRDDVLPSCGGPVPVRSHAQKFFLKLEKSGQAGVVPPPRPKKRAAKPYPVQDRGEERRKSKRSRSSASNSSAHSQPSQTRGAAVSPSTSPSNGRSSPRSAATAATLPVSSRRPLRSSRATRSLANAAASTKGSSQDLEGNGSNIASANESNNDHSEGPSATQENSGLSTGGADLDLQFSADPMSLEAPEAAPRPREKSETPDYGKLYSIVNVLFDSGGAANDEKNHKQMMEQLEPGQRKELLAMMDQLTGNLRSTCPPAQKLEQLKAELKAKSQSPTPPQQPPPTPIPAPARASRLDHAASMPLMPCTACLPMPQTVSEEPLALMQPLPGSQGTALLQPLPCAQQCSFSPVLPPPLASDACELVHCGSGAGSSLGSGIGCGSVAALPGLAADAVLLQQSEPEQSIAEQLLVDNSGEGAGMGQAMFDIQQGSGLEEVGLQLPKSSSLGGNTPLDTCLAQLESGTDPTVPESDDFLDSWKIGSSDPVWQTLEMQQLSPTAPTSPSSFTRDTNGSMFAL*