Gene Details:
- Gene ID: Do002329.1
- Gene Family: MYB_related Family
- Description: MYB_related Family protein
- Species: Dichanthelium oligosanthes
- Source: MYB_related family gene from PlantTFDB
Protein Features:
- Gene3D: G3DSA:4.10.60.10
- PROSITE profile: PS51294
- SuperFamily: SSF46689
- TIGRFAMs: TIGR01557
- SMART: SM00717
- Gene3D: G3DSA:1.10.10.60
- Pfam: PF00249
- InterPro: IPR001878 IPR017930 IPR009057 IPR006447 IPR001005
Annotation Proteins:
- Refseq: XP_004953478.1 — protein REVEILLE 2 isoform X2
- TrEMBL: A0A1E5VGC7 — A0A1E5VGC7_9POAL; Protein LHY (Fragment)
- STRING: Si017289m — (Setaria italica)
Gene Ontology:
- GO:0007623 — Biological Process — circadian rhythm
- GO:0009734 — Biological Process — auxin-activated signaling pathway
- GO:0010600 — Biological Process — regulation of auxin biosynthetic process
- GO:0003677 — Molecular Function — DNA binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
Family Introduction:
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature:
- A novel leaf-specific myb-related protein with a single binding repeat. DOI: 10.1016/s0378-1119(96)00521-5 ; PMID: 8996094
Sequences:
CDS Sequence:
- >Do002329.1|Dichanthelium_oligosanthes|MYB_related|Do002329.1
GAGAATCAGATGGCAACCGACGAGATCGCCGTGGCCGTTCGCGCGGGCGGTGAACCCGCCGTGGATCATCGCAAGGATCCCCTCGATCCCTGCGACATGGATTTGTCCGGGGAGGAGCACCTGCCCAAGGCGCGGAAGCCGTACACGATCACGAAGCAGCGGGAGAAGTGGACGGAGGACGAGCACAAGCGCTTCCTCGAAGCCCTGCAGCTACACGGCCGCGCCTGGCGCCGCATCCAAGAGCATATCGGCACCAAGACCGCCGTGCAAATCCGGAGCCACGCGCAGAAGTTCTTCACCAAGGTGGTCAGAGAATCGTCGGGGAGTAACAGCGCCGTGGGCGCCGCGCCGGCGATCCAGATCCCACCGCCGCGGCCCAAGAGGAAGCCGGCCCACCCGTACCCGCGCAAGGTGGACAGCGCGGCCAAGAAGCACGCGCCGGCGTTCAAGCAGCTGGAGAAGCCGCCCCTGCGGATGCAGTCCCTGCCCGACCAGGACGACGGGTCGCCGACGTCGGTGCTGACCACCGCGCGGACGGTGGTACGAGCGGAGGCGTTGGGCAGCGTGTTCGCGAACAGCTCCAGCGGCAGCAGGTCTCCGGCTCCGTCAGCCACCGGTTCAGACGAGCATGGCAACGGCGCCTCGTCCATCGACAGGGAGGACGGCTGCGCGTCGCCAAGCGTAGCAACAGCTGAGTTGGCGACGAGAACAGCAAATGCCAAGGTGTTCGGTGATGCAAAAGAAGTGTCTTGCATAGGAACAGATGCGCCAGTCTTTAAATTGTTCGGAAAAGTTGTGGTGAAGGATTCCTATGAGCACCTGCACAACGGGTGTGGCCTGAAAACGGATGCTTCACCCGCGAGCGTTGCGCAGGCAACCAGAAACGCAATTCCTTTCGGTGCCGCACAAGGGAGCTCGTGGAATCCATGGCCGAGCAGCATGCAGCAGCTCATGTACTTCGTCCCGCAGGCCGACGGCTTCACCGCGCAGTCCGTGGTGCCGTGGCTCGCCTACAACGGGAGCCTGCCGTGCGCGCTGTTCTACCCGCAGGCGGTGCCTTCGACTCAGCACCACCAGCAGCAGCCTTTAGAGCCTCTGGATCACAAGCGCATGCAGAGGGAAGGGTCGCTGACGGGCTCCAACACGGCCTCCAGCGCCGTGCCGGCCGCGTCGGCGGTGCAGAACTCGGACCCCGCGGAGTCCCACGGTCCCGGGCATGTCGACGCCAGCGAGAGCGACGCGGCGCTGGCGGCTGCCGCTGCCGCTGGCGTCCCGCGGCTGACGAAGTGCGCAAGCTCGGCTTCCTTCAGCCGGAGAGGGTTCGTGCCGTACAAGCGTTGCGCGGCCGAGAGCGAGGCGCCGCGGCCCGTGGCGGCCGGAGAGGAGGCCGACGGCGAGCTGACGAGGCTGTGCTTGTAA
Protein Sequence:
- >Do002329.1|Dichanthelium_oligosanthes|MYB_related|Do002329.1
ENQMATDEIAVAVRAGGEPAVDHRKDPLDPCDMDLSGEEHLPKARKPYTITKQREKWTEDEHKRFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFTKVVRESSGSNSAVGAAPAIQIPPPRPKRKPAHPYPRKVDSAAKKHAPAFKQLEKPPLRMQSLPDQDDGSPTSVLTTARTVVRAEALGSVFANSSSGSRSPAPSATGSDEHGNGASSIDREDGCASPSVATAELATRTANAKVFGDAKEVSCIGTDAPVFKLFGKVVVKDSYEHLHNGCGLKTDASPASVAQATRNAIPFGAAQGSSWNPWPSSMQQLMYFVPQADGFTAQSVVPWLAYNGSLPCALFYPQAVPSTQHHQQQPLEPLDHKRMQREGSLTGSNTASSAVPAASAVQNSDPAESHGPGHVDASESDAALAAAAAAGVPRLTKCASSASFSRRGFVPYKRCAAESEAPRPVAAGEEADGELTRLCL