Information report for Cc02_g38230
Gene Details
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Functional Annotation
- Refseq: XP_027158877.1 — AT-rich interactive domain-containing protein 1
- Refseq: XP_027158878.1 — AT-rich interactive domain-containing protein 1
- TrEMBL: A0A068UK10 — A0A068UK10_COFCA; Uncharacterized protein
- STRING: Solyc05g049960.2.1 — (Solanum lycopersicum)
- GO:0010628 — Biological Process — positive regulation of gene expression
- GO:0016575 — Biological Process — histone deacetylation
- GO:0048235 — Biological Process — pollen sperm cell differentiation
- GO:0000118 — Cellular Component — histone deacetylase complex
- GO:0048555 — Cellular Component — generative cell nucleus
- GO:0048556 — Cellular Component — microsporocyte nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Manihot esculenta: Manes.01G255100.1.p, Manes.05G032600.4.p, Manes.05G032600.3.p, Manes.05G032600.2.p, Manes.05G032600.1.p
- Nicotiana tabacum: XP_016515321.1, XP_016515320.1, XP_016515319.1, XP_016515318.1, XP_016515317.1, XP_016515316.1
- Petunia inflata: Peinf101Scf00088g00014.1
- Prunus mume: XP_016650277.1, XP_008233025.1, XP_008238928.1
- Prunus persica: Prupe.2G173100.2.p, Prupe.2G173100.1.p, Prupe.5G103500.1.p
- Vitis vinifera: GSVIVT01027004001
- Ziziphus jujuba: XP_015866473.1, XP_015866475.1, XP_015866474.1, XP_015896116.1
Sequences
CDS Sequence:
- >Cc02_g38230|Coffea_canephora|MYB_related|Cc02_g38230
ATGGCAGGGTGGTTGAAGAGAGTTGATGGGTCAGGTCTAGAAAGCTTCAAATTTAACCGGAAAGTTGAAGAAGCGAAGCAGCCTTCCTGTGGTAATCTTAAGTCTTCATTCGATGAATTTTTGCCTGTTTTTCTCAAAAAATCTTTTGGGATTCTGTGTTTTAGACCATTGCCTCCAATGCTGGGTAATGGGCAATCTGTAGATTTGTTTAAACTTTACTTACGTGTTAGAGATAGAGGTGGACTTGAGAAGGTTTCAAAAACTGGGCAATGGGGTTCGGTGGCTCTGGAATGTGGAGTTGATTCAAGTTCAGCTTCGGCTTTGAAGTTGGTTTATGTGAAGTATTTGGATACATTAGATAAATCTTTGCAGAGAGTAGTTAGAGGTGAGAGTTCAGAAAGAGGAGCGAACGAGAGTGGTTTGGATATTTTAAAAGAGTTGGTCATGGATTTGGAGTCTGATTTGAAGGGGTTTTTATCAGGGATTGTAGATAACAAGAACAAAGATGGAGAAGTTACGAGTGTGGAGTTGAAGAAAAAGGAGTTCGATTTTGAAAGTGGTGGAAAATTTGCTAGACTTGATGAAGTTGGAGGCCTCGTCAAATTAAATGGAGATGCTGAGGATGGAGACAAAACTAGTGCTGCTGATGATGGAGGCGAGTGTGGTTTTGTGAGTTTTGATGTAGAGGAAAAACCTGATGGTGTTGATAGTCTTTTTGAGGTTGGCATTAGGGAAGAAAGAAGGATAGAGGATGGTGATACACAATTGGATTCGAGTAGTAGGAAGGAAGATCTTGTTAGGAGAAAGAGGAGGCGGGAGAGCTACTTGAGCATGCTGAAATGGATTAACAGGGTTGCGAGGGATCCCTGTGATCCGGCAATTGGGTTCTTACCAGATAAGTCCAAGTGGAAGTACTACGCAAATGACTTGGTCTGGAAACAGGCTCTGTTGGTTCGAGAGGCAATGATGTCAAAAAGGAACTCCGAGTCAAGTGATCAACATTCAATTTTGCAGAAGAAACAAAAGATGCATCCAGTCTTGTATGATGATCAAATTGGTTCTGAGAGACAGAGATTCAGCCAGAGGCTACTTTCTGCAAAAGATCCTTCAAAAAAGTCAAGGGCCCGGAATTTCTCAGAGTCGTGTTCTTCTGGTACTCAAAGTGATGAGGAGTTCAATGACACACAGTCTGATTCCTCTTCAGATTCAGAAGCTGATTTTGTGGGGAGTCGTCGTCATCGGAAAAAGCGTATTCCTTTGGGGCCACAATTTCAAGCAGATGTTCCAGAATGGACTGGGAAGGCTTGTGAAAGCGATTCTAAGTGGCTAGGTACCCAATATTGGCCACTTGTAAGAGTAGAACAAAATAGAAACTTAATTGAAAGGGAACGCATTGGAAAGGGAAGACTAGATTCATGTGGTTGCCAAATTCCTGGTTCCTTGGAATGTGTTAGGTTCCACGTCTCTGAAAAGAGGACGAGGGTGAAACTTGAGTTGGGGCCTGCATTTTATCGATGGAAATTCGACAATATGGGTGAAGATGTTGCACTTTCTTGGACGAAGGAAGAAGAGAAGAAGTTCCATAATATAGTGAAGTCAAACCCTTTGTCTCTTGGCAAGTGTTTCTGGCATGAAATTGTTAAAGCTTTTCCAAACAGAAGTAGGGAATCACTGGTAAGCTACTACTTCAATGTCTTCCTTCTCCATCGCAGAGGTTACCAGAACAGAGTAACACCAACTGACATCAACAGTGATGATGATGAATCAGAGTCCAGCTACGGTAGTGCCAAACCTCCTGGCTCAATCTTTTGTTCGCCGAAGAAGCCACATCTGAATATAGGATGA
Protein Sequence:
- >Cc02_g38230|Coffea_canephora|MYB_related|Cc02_g38230
MAGWLKRVDGSGLESFKFNRKVEEAKQPSCGNLKSSFDEFLPVFLKKSFGILCFRPLPPMLGNGQSVDLFKLYLRVRDRGGLEKVSKTGQWGSVALECGVDSSSASALKLVYVKYLDTLDKSLQRVVRGESSERGANESGLDILKELVMDLESDLKGFLSGIVDNKNKDGEVTSVELKKKEFDFESGGKFARLDEVGGLVKLNGDAEDGDKTSAADDGGECGFVSFDVEEKPDGVDSLFEVGIREERRIEDGDTQLDSSSRKEDLVRRKRRRESYLSMLKWINRVARDPCDPAIGFLPDKSKWKYYANDLVWKQALLVREAMMSKRNSESSDQHSILQKKQKMHPVLYDDQIGSERQRFSQRLLSAKDPSKKSRARNFSESCSSGTQSDEEFNDTQSDSSSDSEADFVGSRRHRKKRIPLGPQFQADVPEWTGKACESDSKWLGTQYWPLVRVEQNRNLIERERIGKGRLDSCGCQIPGSLECVRFHVSEKRTRVKLELGPAFYRWKFDNMGEDVALSWTKEEEKKFHNIVKSNPLSLGKCFWHEIVKAFPNRSRESLVSYYFNVFLLHRRGYQNRVTPTDINSDDDESESSYGSAKPPGSIFCSPKKPHLNIG*