Gene Details:

• Gene ID: Cc02_g38230
• Gene Name: GSCOC_T00027890001
• Gene Family: MYB_related Family
• Description: MYB_related Family protein
• Species: Coffea canephora
• Source: MYB_related family gene from PlantTFDB

Protein Features:

• Gene3D:  G3DSA:4.10.60.10
• PROSITE profile:  PS51294
• SuperFamily:  SSF46689
• TIGRFAMs:  TIGR01557
• SMART:  SM00717
• Gene3D:  G3DSA:1.10.10.60
• Pfam:  PF00249
• InterPro:  IPR001878    IPR017930    IPR009057    IPR006447    IPR001005

Annotation Proteins:

• Refseq:  XP_027158877.1  — AT-rich interactive domain-containing protein 1
• Refseq:  XP_027158878.1  — AT-rich interactive domain-containing protein 1
• TrEMBL:  A0A068UK10  — A0A068UK10_COFCA; Uncharacterized protein
• STRING:  Solyc05g049960.2.1  — (Solanum lycopersicum)

Gene Ontology:

• GO:0010628  — Biological Process — positive regulation of gene expression
• GO:0016575  — Biological Process — histone deacetylation
• GO:0048235  — Biological Process — pollen sperm cell differentiation
• GO:0000118  — Cellular Component — histone deacetylase complex
• GO:0048555  — Cellular Component — generative cell nucleus
• GO:0048556  — Cellular Component — microsporocyte nucleus
• GO:0003677  — Molecular Function — DNA binding

Family Introduction:

• A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.

Literature:

• A novel leaf-specific myb-related protein with a single binding repeat.   DOI:  10.1016/s0378-1119(96)00521-5 ;  PMID:  8996094

Sequences: