Information report for Carubv10019876m
Gene Details
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Functional Annotation
- Refseq: XP_006300624.1 — uncharacterized protein LOC17894921 isoform X2
- TrEMBL: R0GCR0 — R0GCR0_9BRAS; Uncharacterized protein
- STRING: XP_006300624.1 — (Capsella rubella)
- GO:0009651 — Biological Process — response to salt stress
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G72650.1, AT1G72650.2
- Brassica napus: GSBRNA2T00099538001, GSBRNA2T00103357001, GSBRNA2T00102589001, GSBRNA2T00049170001
- Brassica oleracea: XP_013591924.1, XP_013591922.1, XP_013591921.1, XP_013591925.1, XP_013591923.1, XP_013588439.1, XP_013588438.1
- Brassica rapa: XP_009104846.1, XP_009104845.1, XP_009105586.1, XP_009105925.1, XP_009105924.1, XP_009105926.1
- Raphanus raphanistrum: RrC1513_p5
Sequences
CDS Sequence:
- >Carubv10019876m|Capsella_rubella|MYB_related|Carubv10019876m
ATGGGAACTGTGGTTGGAACTGTTGAGGACTGCAGGGAGATGTTTGAAGGCAGTGCTCAGACAAGGATCACACCCTTTTCTTCATCAAATCAGATTGGAAATCCTGTTGCCTATAAGCTTGTCCGGGTTTCAGGAGATGGGAGACTAGTGCCTGCAACCGATGAAGAAATTTTGGAGGTCAATGACGCGGATATGCATATTGTATCAGATGCTTGTCAGACTGTAGACTACCTTGCAACCGATGAAGAAAATTTGGAGGTCAGTCAGAAAAATATGCATATTGCATCAGATGCTTGTCAGACTGTAGGCTACCTAGCAACCGATGAAGAAAATTTGGAGGCCAATGAGACAAATATGCATATTGCATCAGATGCTTGTCAGACTGTAGGCTACCTAGCAACCGATGAAGAAAATTTGGAGGCCAATGAGACAAATATGCATATTGCATCAGATTCTTGTGAGACTGTATGCTACCTTTCAGCTGAAGGGATGCCTTCTGGGTTGTCCCAGTTTGAAAATTCAGAAGCTATGAATTCAGGGTTATTGCAGTCTGATAATGTGCCACCGTATATAGACCAGTATAATGGGGAGATGCTGCAAAAGGTCGAACAGGATGAGAGGCTTGGCAATGTACATGGATCTCAGATGCCTTCTACCCCTTCAGATGCTAACATCCAGTGTTCTAATGAAGACACATTTAATAAGGAGGATCAAGTCCACCATGTAGCCTTGTTGCAAGAACCCATTTCTTTATCATCGAATGTTGAGAATGAATGCAATATGAATCAACCTGATATGATTGAACCATGCTCAAATGCAGCAGCTAGTCCCAAAGAAACTGCATTGTCTGTAACTGCTCAAAAACCTGATTTTTCTAGAGTTAGAGGCGATATCTGCTTAGACAATTTACCGATCAAAGCACTTCAAGAAACATTCAGGGCAACGTTTGGCCGTGAGACAACTGTTAAGGACAAGACTTGGCTCAAAAGGAGGATTGCAATGGGACTTATTAATTCTTGTGATGTACCAGCAACTAACTTGACAATAAAAGATAACAAGTTAGTTGGGAATCAAGAGAAGTCCAATGTTATGACTAATGTCATTAGCAAGGATATGGGTGATGATGTAAGAGCTGCTAAACCGAAAGATGCGCCATCGAGTATTGATCATGTGAATGCTTCTGACCACTATTATGCTAGTGAGGATTATTCCAGTGAACAGAGGGCTGCAAAACGAGTTAGGAAGCCTACACGAAGATACATTGAAGAACTATCTGAAACAGATGAAAAACAGCAAAATGACAAGTCAATGATTCCATCAAAGGATCAGAGGTTATCCGAAAAACCTGAGGTCAGGTCTATCAGTGTCTCCTCAGGGAAGAGAGTTGCTGTCACCAGGATGGTATCTCTTGCTGGATCTGAAATTGAGGTTCCATATGTTTCTCATGTCCGAAGAAGCCGTCCAAGAGAGAACATTATGGCTCTTATGGATTGTCATTCCAGTTGTTTGGAAAATAGAGCTAGTCCAGCAGAGAGTAACTTCAGTTTGACCCCATCTCAGTTAAACAATGAGGTTGTGAAGCAAGATTTGGTGGTAAAGTCTGCTTCCCGACCGGTCCAAAAAGAGGTTGCTACAAGTCACAAGAACAACGAGGAGCCTATTCTGAGTGAGGTTGATCAAGACACAGAGCCAGAGCACATAGACTCCTCTGGAAATAGCTCGGATGACAATAATAACATGGACGTGACAATCATGCAAGGTGGTGCACTTAGAAGGAAGCACCATCGAGCTTGGACTCTGTCTGAAGTTACGAAACTAGTCGAGGGTGTATCAAAATATGGAGCTGGGAAGTGGTCTGAGATAAAAAAGCATTCCTTTTCATCATATTCATATCGTACCTCTGTAGATCTCAAGGACAAATGGCGAAATCTTCTGAAAGCAAGCTTTGCTCAGAGTCCCTCAAACAGCATGGGAAGTCTCAAGAAACATGGGTCTATGCACATTCCTATGCAGATTCTGTCACGGGTAAGGGAACTCGTGGAAAAGCAATCTCTGGTTCCACCGGTAAGCAAAGTTGGTGGAGATAGCAACAGAAGGGAAAGGGAAACAAGATCCGACATCTTGTAG
Protein Sequence:
- >Carubv10019876m|Capsella_rubella|MYB_related|Carubv10019876m
MGTVVGTVEDCREMFEGSAQTRITPFSSSNQIGNPVAYKLVRVSGDGRLVPATDEEILEVNDADMHIVSDACQTVDYLATDEENLEVSQKNMHIASDACQTVGYLATDEENLEANETNMHIASDACQTVGYLATDEENLEANETNMHIASDSCETVCYLSAEGMPSGLSQFENSEAMNSGLLQSDNVPPYIDQYNGEMLQKVEQDERLGNVHGSQMPSTPSDANIQCSNEDTFNKEDQVHHVALLQEPISLSSNVENECNMNQPDMIEPCSNAAASPKETALSVTAQKPDFSRVRGDICLDNLPIKALQETFRATFGRETTVKDKTWLKRRIAMGLINSCDVPATNLTIKDNKLVGNQEKSNVMTNVISKDMGDDVRAAKPKDAPSSIDHVNASDHYYASEDYSSEQRAAKRVRKPTRRYIEELSETDEKQQNDKSMIPSKDQRLSEKPEVRSISVSSGKRVAVTRMVSLAGSEIEVPYVSHVRRSRPRENIMALMDCHSSCLENRASPAESNFSLTPSQLNNEVVKQDLVVKSASRPVQKEVATSHKNNEEPILSEVDQDTEPEHIDSSGNSSDDNNNMDVTIMQGGALRRKHHRAWTLSEVTKLVEGVSKYGAGKWSEIKKHSFSSYSYRTSVDLKDKWRNLLKASFAQSPSNSMGSLKKHGSMHIPMQILSRVRELVEKQSLVPPVSKVGGDSNRRERETRSDIL*