Information report for Carubv10012855m
Gene Details
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Functional Annotation
- Refseq: XP_023641610.1 — protein ALWAYS EARLY 3
- Refseq: XP_023641611.1 — protein ALWAYS EARLY 3
- Refseq: XP_023641612.1 — protein ALWAYS EARLY 3
- Swissprot: Q6A332 — ALY3_ARATH; Protein ALWAYS EARLY 3
- TrEMBL: R0HWF7 — R0HWF7_9BRAS; Uncharacterized protein
- STRING: XP_006296867.1 — (Capsella rubella)
- GO:0005730 — Cellular Component — nucleolus
- GO:0016592 — Cellular Component — mediator complex
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G21430, AT3G21430.2
- Brassica napus: GSBRNA2T00066305001, GSBRNA2T00079986001
- Brassica oleracea: XP_013586570.1, XP_013586569.1
- Brassica rapa: XP_009145478.1
- Gossypium arboreum: Cotton_A_04877_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A02G0465
- Raphanus raphanistrum: RrC548_p3
Sequences
CDS Sequence:
- >Carubv10012855m|Capsella_rubella|MYB_related|Carubv10012855m
ATGGCGCCTTCAAGATCAAAGAAATCTAAGTACAAGAAAACTCCCAGGAGTAAAGCTGTCTCTCCTCAAAAAGACGACGAAAATATGAGCAAAACCAAACAACGGAAGAGGAAGTTGTCGGATATGTTAGGTCCTCAGTGGAGCAAGGAAGAGTTGGAGCGCTTTTATGAAGGATACCGCAAATTTGGAAAAGAATGGAAAAAGGTGGCTGCGTTTGTACATAGCCGTTCTGCAGAAATGGTAGAGGCCCTATACACTATGAATAAGGCTTACTTGTCTCTTCCCGAGGGCACTGCTTCTGTGGTTGGCCTAAATGCGATGATGACTGATCACTATTCTGTTCTGCATGGAGGAAGTGACAGTGAGCAGGAAAATAATGAAGGTACTGAAACTCCGAGGTCAGCCCCTAAGCGCTCTAAAGTAAAATCCTCTGATCATCCCTCTACAGGATTAGAGGGTCTGTCTGATCGCTTGCAATTCAGGTCTTCTTCAGGCTTCTTGCCATCGCTAAAAAAGAGACGTACTGAGACTCTGCCTCGTGCTGTTGGAAAAAGGACTCCTAGAATTCCTATCTCATATACCCTTGAGAAGGATACTAGGGAAAGATATTTATCAACTGTTAAGAGGGGTCTAAGTCAGAAGGGAGATGATACTGATGACGATATGGAACATGAGATTGCATTAGCATTGGCTGAGGCTTCGCAACGAGGTGGCTCTACAAAGAACTCCTACACACCAAATAAAAAAGCAAAGATGTACCTTTCTGATAATAAGGGTGAAAGAATGCGTGCCGATATTGACTTGGCAATCGCCAAGCTTCGTGCTGGTGATATGGAAGATGTGCACTGTGAACCAAGCTCAGAAAGCACTGAAGCTGATAATGCGGATTATTCTGGAGGAAGAAATGACTTGACGCATGGAGAAGGTACTAGTGCCACAGAAGTGCAGCAAACAGGAAGAAAATACTATAGGAGGAGATTAGGCATTAAAAAAGAAGATGCAAAAGAAGCCTGCAGTGGTACAGACGAAGCACCAAGTTTAGGTGCCCTCGATGAGAAATTTGAACCAGAAAGGGATGAGAAGTTTTTGAAACTCACATATAAATTTTCAAGGAGAAAAAGTAAAAAGAGTCTCTTTACTGCAGATGAAGACACAGCATGTGATGCTCTCCAGACGCTGGCAGATCTTTCCCTCATGATGCCTGAAACTGCCACAGATACTGAGTCATCGGTTCAAGTTGAGGAAAAGCGAGCTGGAAAAGCTTATGTGTCAGATTTAAAAGGGACTGATCCAGCATCCATTAAAAGTAGTTTTCATAGAAACTCCAAACAGAGAAGATCAGGTAGCAGTGATCTTTGTAATACTGAAGCGGAAAGAAAAAGTCCCAGTAGCTCTTTAATCAGAAAGAGACGGCAGAAAACACCACCAGCTAAAGTTACGAAAGATGAGCTTGCTGCAAGCTCACAAGTCATAGAGCCTTGCAATAACAAGGGAATAGGTGAGGGAAATAAGCCTGTTGGGAGAGGTAAACGATCTGCAAGTATTCGAAACTCACATGAAAAGAAGCCTGTTAAACCTCAAGATCGTACTTTCTCAAGTAACAACATAGTGGAAGAAGATGAGTCAGCTCCATCAAATGCAGTCATTAAAAAACAAGTTAACTTGCCAACTAAAGTTAGGAGCAGAAGAAAGATAGTAACTGAGAAACCTCTTACTATTGATGACGGGAAAAATTCTGAGACTCTAGAGAAGTTTTCGCATTGCATTTCTAGTGAACGAGCACGAAGATGGTGTCTTTTTGAGTGGTTCTACAGTGCAATTGATTATCCATGGTTTGCCAGACAAGAATTTGTTGAGTATCTGGATCATGTAGGGTTGGGTCATGTTCCTAGATTAACTCGCGTGGAATGGGGTGTCATAAGGAGTTCCCTTGGCAAACCAAGGCGATTTTCTGCACAGTTTTTGAAGGAGGAAAAAGAAAAGCTATACCTGTACAGGGACTCTGTAAGAAAACATTATGATGAACTAAACACGGGCATGAGGGAAGGACTTCCAATGGATTTGGCTCGGCCTCTAAATGTTTCACAGAGAGTCATTTCCCTGCATCCAAAGTTGAGAGAGATTCACGACGGCAGTGTCCTAACTGTTGATCACTGTAGGTACCGGATTCAGTTTGACCACCCTGAATTAGGGGTGGAATTTGTTAAGGATACTGAATGCATGCCACTGAATCCCCTAGAAAACATGCCAGCATCACTTGCAAAGCACTATGCCTTCCCAAACTATCACATTCAGAATACTAGTGAGGAGAAAATGCAAGAGCGGGTAAAGGAAAGCACGCCAGAAGGACATCTCAAACTTTCGTGTGAGACAGGCCATCTCTTATCCCCACCAAATTATAACATTAGCAATTCCTTAAAACAGGAAAAGGTTGATATCTCGAGTTTAAATCCACAAGCTCTAGACGGAGTCGATGAGGCTCTTGATTTACCATTGTTGAATTCCCAGCCTTCAACTATTGGACATATCCAGGCAAGAGAAGCTGATGTCCAAGCTCTCTCTGAACTGACACGTGCCCTTGACAAGAAGGAGCTAGTTTTGAGGGAGCTAAAGTGCATGAACAACGAAGTTGTGGAAAGTCAGAAAGATGGACATAATGCTTTAAAGGAGTCTGAATCTTTTAAGAAACAATATGCAGCGGTTCTCTTTCAGCTAAGCGAAATCAATGAGCAGGTTTCATTGGCACTTCTTGGCTTGAGGCAACGGAATACTTACCAAGAGAATGTACCATATGCATCAATAAGACACATGAGTCAATCAGGGGAACCTGATGGCCAGTTGACCTACATAGACAGTTACGCATCAGACACTAATGGATTCCATGTGTCTGAGATCGTCGAAACTTCTAGAATACAAGCACGGAAAATGGTATACAGAGCTGTACAGGCATTGGCGTCGCTGAGGAAAGACGAAAATAATGTTGTAACTATGGAAGAAGTCATTGATTTTGTAAATAATCATCTCTCAATAGATCAAACAGAAGTATCATCAGTCCACCAAAGACAAGGTGCACAGGATCAGCGTCTTCCCTTTACACTAAATTCACCTAGTTCAACTCCTGCCAATGATATCCATCAAAACCCACCCGACCAAAATGACCTACAAATCCCGTCTGAACTAGTTTCGCGCTGTATGGCTACATTACTTATGATTCAGAGATGTACAGAGAGGCAATTCCCACCAAGTGAAGTGGCCCAGGTTCTAGACTCGGCGGTGGCGAGTTTGCAGCCTTGCTGCTCGCAGAACCTTCCGATCTATACAGAGATTCAGAAATGCATGGGGATCATTAGAAACCAGATCCTTGCCCTCGTACCCTCCTAA
Protein Sequence:
- >Carubv10012855m|Capsella_rubella|MYB_related|Carubv10012855m
MAPSRSKKSKYKKTPRSKAVSPQKDDENMSKTKQRKRKLSDMLGPQWSKEELERFYEGYRKFGKEWKKVAAFVHSRSAEMVEALYTMNKAYLSLPEGTASVVGLNAMMTDHYSVLHGGSDSEQENNEGTETPRSAPKRSKVKSSDHPSTGLEGLSDRLQFRSSSGFLPSLKKRRTETLPRAVGKRTPRIPISYTLEKDTRERYLSTVKRGLSQKGDDTDDDMEHEIALALAEASQRGGSTKNSYTPNKKAKMYLSDNKGERMRADIDLAIAKLRAGDMEDVHCEPSSESTEADNADYSGGRNDLTHGEGTSATEVQQTGRKYYRRRLGIKKEDAKEACSGTDEAPSLGALDEKFEPERDEKFLKLTYKFSRRKSKKSLFTADEDTACDALQTLADLSLMMPETATDTESSVQVEEKRAGKAYVSDLKGTDPASIKSSFHRNSKQRRSGSSDLCNTEAERKSPSSSLIRKRRQKTPPAKVTKDELAASSQVIEPCNNKGIGEGNKPVGRGKRSASIRNSHEKKPVKPQDRTFSSNNIVEEDESAPSNAVIKKQVNLPTKVRSRRKIVTEKPLTIDDGKNSETLEKFSHCISSERARRWCLFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSAQFLKEEKEKLYLYRDSVRKHYDELNTGMREGLPMDLARPLNVSQRVISLHPKLREIHDGSVLTVDHCRYRIQFDHPELGVEFVKDTECMPLNPLENMPASLAKHYAFPNYHIQNTSEEKMQERVKESTPEGHLKLSCETGHLLSPPNYNISNSLKQEKVDISSLNPQALDGVDEALDLPLLNSQPSTIGHIQAREADVQALSELTRALDKKELVLRELKCMNNEVVESQKDGHNALKESESFKKQYAAVLFQLSEINEQVSLALLGLRQRNTYQENVPYASIRHMSQSGEPDGQLTYIDSYASDTNGFHVSEIVETSRIQARKMVYRAVQALASLRKDENNVVTMEEVIDFVNNHLSIDQTEVSSVHQRQGAQDQRLPFTLNSPSSTPANDIHQNPPDQNDLQIPSELVSRCMATLLMIQRCTERQFPPSEVAQVLDSAVASLQPCCSQNLPIYTEIQKCMGIIRNQILALVPS*