Information report for Carubv10000150m
Gene Details
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Functional Annotation
- Refseq: XP_006287004.1 — protein ALWAYS EARLY 1 isoform X1
- Swissprot: Q6A331 — ALY1_ARATH; Protein ALWAYS EARLY 1
- TrEMBL: R0FCS2 — R0FCS2_9BRAS; Uncharacterized protein
- STRING: XP_006287004.1 — (Capsella rubella)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G05380
- Brassica napus: GSBRNA2T00144207001, GSBRNA2T00133776001, GSBRNA2T00028858001, GSBRNA2T00120517001, GSBRNA2T00119961001, GSBRNA2T00038579001
- Brassica oleracea: XP_013598393.1, XP_013616256.1
- Brassica rapa: XP_009151196.1, XP_009151195.1, XP_009129869.1, XP_009147247.1
- Raphanus raphanistrum: RrC2295_p2
Sequences
CDS Sequence:
- >Carubv10000150m|Capsella_rubella|MYB_related|Carubv10000150m
ATGGCGCCCAGTAAGAAGTTGAAGAGTGTGAACAAGCGCTTCACCACTGAAGCTTCTTCAGATATCAATGTTGGGAGCTCATCCAAAACCAATCAACGAAAGAAGAAACTGACTGACAAGTTGGGACCTCAGTGGACCAAAGGAGAGCTTGAGCGTTTCTATGATGCTTATCGGAAGCATGTGGGTGACTGGAAAAAGGTAGCTGCTGTTGTGCGGAATAACCGGTCTGTTGAGATGGTGGAAGCTCTTTTCTCTATGAATCGGGCATACTTATCCTTGCCCGAGGGAACTGCGTCTGTAGCTGGCCTCATTGCAATGATGACTGATCATTACAGCGTCATGGAGGGGAGCGAAAGTGAAGGAGAAGACCATGATGCTTCTGGAGTACTGACCAAACATCAGAAGCGCAAACGTGCTAAAGTTCAGGCTATTGATTTTCAGGAAGAAGCTATTCCACCACATTCAGTTGCATCAACAGAAGGATGCCTCTCACTACTGAAGCAGACACAAGCTTTTGAAAAAAGGCAACGTGCCACTGGGAAGCGTACACCAAGGTTTCTTGTAGCAATTACATACGAGGGGGGTGGTAGAGAAGATTCTACTCCATCAAATAAAAGAGCCAAGAAACAACTTGATCCCGTTGATGATGCATCAAGAAGGGGAGGAGGAGGCTCTCCATATAAAAGAACAGAACTCAGTGGCAGCACACCAGTTAGGCTTGGAAAGAGGTTACAAGCACAGGAAGCTCAATCCAAGCACCCCGATAGTTGCATGTTTGAGAATAGGGTGAGAATAAGCCGAGATAAAAGGCATAAAAAGGGACCTGCTGATATAGACGATGCATTGTTGATGGATATGGTTCCCCAGAAGGGGAAAACTGTGAGAGTTGAAGAAGCAGAAGGAATTGATGATGATGATGATTATGCAATACAAGGTCTGAATGCATTGGCTGATCTTTCAGCTTCACTGGCTCCGAGTGGTTTGATTGAATCAGAATCATCTGCACGGAGGGAAGAAGAAAGAATAGCGAACAACGTGGGTGAGAAATCTAGCACACTGGAAACCGTGTTCACAAGCCATCACAGAGAAAAAGCAAAACAAGTAGGACCAGAAGACGGTCTCCTACATGAAGTTTCAGCCGCAGATAAAAGAAAACCGAAGCCTGTGCAGGAACCCGTTGATGGTAATGCTGTTTCCGTCGGGGATCTTGGCACTTCAAAAAGAAAACGTAAACCAAAGTTTCAGGTGCTAGATGTTGAAGTTTCAGAAGAGTCTATTCAGACCAAATCTCTATTTACTAAGGAATCGGCTGAAGATGATAACTTGAAGACTCTGGTCAAAGCAAGACCTGCTAGTGAAGGTCCAGCGAATCAGCTGAAAGCTGCAAAGACCTCGGAAGAATCTTCTTTAACTAGTGATAAGAATATAACTGGACCGGATGCAGTAGTTTCAGCTTCACAAGGTTCAGCGGATCCAGTGGCTTTTCCACAGAAACGTCCAGACAAGCGTAAGATGAGTTTGAAGAAAAGTTTACAACAAAGAGCTATATCTTCTGAAACCACTCATGACAAGACACGTAGTTTCGAAAAGTTGTCAGAACATGAATTACTACAGGAGAAAGTTTCGACTTGTCTGTCATATCCATTGGTACGTCGATGGTGCATATTTGAATGGTTCTACAGTGCTATTGACTACCCCTGGTTTGCAAAGACAGAGTTCACTGATTATTTAAATCATGTGGGTCTCGGTCATGTTCCAAGACTTACTCGTCTTGAATGGAGTGTCATTAAAAGTTCCCTCGGAAGACCTCGGAGATTCTCTGGGAGATTCCTACAGGACGAGCGGGATAAACTCCAACAATATCGTGAATCTGTGAGAAGGCATTATACAGAGCTCCGTGGATGTGCTAGGGAAGTGCTTCATACAGATTTGGCCCGGCCTTTATCAGTCGGGAATAGAGTCATTGCCATCCATCCTAAAACGCGGGAAATTTGTGATGGCAAGATTCTTACTGTGGATCATGACAAGTGCAACGTTCTGTTTGATGAATTGGGAGTTGAGCTAGTCATGGACATTGACTGCATGCCCTTAAATCCATTAGAATACATGCCAGAGGGTCTGAGAAAGAAAATCGATAAGTGCTTGTCTATAAGTAAAGAAGCACAGCTTAACAGACACTCAAACTCTGATGCATCTCTTCTGTTCTCTCCTCCTGTGCTTGAAAATGTCAAATTTTCAAAGAATTCTCCTGCCAAACAGGATGACATCAGCGAGCCAGTTTTGTATAATCAAGAGTTAGCAACCAACACTTCTGATCAATCTGTCAAAACCAATAGCCAAACAAGAGGAACTGAAATTCAACGACCTCTGACACTGCAGCGTACTTCAGATGAACAGGAAATGGAGCCAGAAATTATTGAAATTGTCAGTGGTTCAAAGTCGATAGCGCAAGAAATGGTGGATGCAGCTATGAAGGCTGCATTGTCGGAGAAGAACAACAACAGCAATGAAGACTCAGGAAATATGGTCCAACAAGCTTTAAGCTCAAATGGCAAACATCAGCCACTAGACAACTCTTTAGTGTCTGGTATCAAGCATCAACAGCATACCAATGGCAGCTTGGATCATCATCCCTCAAACACAGCAGAGCCGAGTAACGGTATCATATCACAAGACGGATCAGGGAAAAAGAAAACGCCAATGCCTTCAGAGCTTATCACCTCTTGTGTTGCAACTTGCCTCATGATTAAGATGTGCACAGAGAAGCAGTACCCACCAGCGGATGTGGCTCAGCTGATGGAGACAGCAGTGAGTGGCTTGCAGCCACGGTGTCCACAGAACATGCCGATCTACAGAGAAATTGAGACATGCATGGGATTGATTAAGACTCAAATCATGGCTCTTGTAAGAACATGA
Protein Sequence:
- >Carubv10000150m|Capsella_rubella|MYB_related|Carubv10000150m
MAPSKKLKSVNKRFTTEASSDINVGSSSKTNQRKKKLTDKLGPQWTKGELERFYDAYRKHVGDWKKVAAVVRNNRSVEMVEALFSMNRAYLSLPEGTASVAGLIAMMTDHYSVMEGSESEGEDHDASGVLTKHQKRKRAKVQAIDFQEEAIPPHSVASTEGCLSLLKQTQAFEKRQRATGKRTPRFLVAITYEGGGREDSTPSNKRAKKQLDPVDDASRRGGGGSPYKRTELSGSTPVRLGKRLQAQEAQSKHPDSCMFENRVRISRDKRHKKGPADIDDALLMDMVPQKGKTVRVEEAEGIDDDDDYAIQGLNALADLSASLAPSGLIESESSARREEERIANNVGEKSSTLETVFTSHHREKAKQVGPEDGLLHEVSAADKRKPKPVQEPVDGNAVSVGDLGTSKRKRKPKFQVLDVEVSEESIQTKSLFTKESAEDDNLKTLVKARPASEGPANQLKAAKTSEESSLTSDKNITGPDAVVSASQGSADPVAFPQKRPDKRKMSLKKSLQQRAISSETTHDKTRSFEKLSEHELLQEKVSTCLSYPLVRRWCIFEWFYSAIDYPWFAKTEFTDYLNHVGLGHVPRLTRLEWSVIKSSLGRPRRFSGRFLQDERDKLQQYRESVRRHYTELRGCAREVLHTDLARPLSVGNRVIAIHPKTREICDGKILTVDHDKCNVLFDELGVELVMDIDCMPLNPLEYMPEGLRKKIDKCLSISKEAQLNRHSNSDASLLFSPPVLENVKFSKNSPAKQDDISEPVLYNQELATNTSDQSVKTNSQTRGTEIQRPLTLQRTSDEQEMEPEIIEIVSGSKSIAQEMVDAAMKAALSEKNNNSNEDSGNMVQQALSSNGKHQPLDNSLVSGIKHQQHTNGSLDHHPSNTAEPSNGIISQDGSGKKKTPMPSELITSCVATCLMIKMCTEKQYPPADVAQLMETAVSGLQPRCPQNMPIYREIETCMGLIKTQIMALVRT*