Information report for CA06g18030
Gene Details
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Functional Annotation
- Refseq: XP_016555933.1 — PREDICTED: DNA mismatch repair protein MSH2
- Swissprot: O24617 — MSH2_ARATH; DNA mismatch repair protein MSH2
- TrEMBL: A0A2G2ZC30 — A0A2G2ZC30_CAPAN; DNA mismatch repair protein MSH2
- STRING: Solyc06g069230.2.1 — (Solanum lycopersicum)
- GO:0006290 — Biological Process — pyrimidine dimer repair
- GO:0006298 — Biological Process — mismatch repair
- GO:0045128 — Biological Process — negative regulation of reciprocal meiotic recombination
- GO:0005886 — Cellular Component — plasma membrane
- GO:0003684 — Molecular Function — damaged DNA binding
- GO:0005524 — Molecular Function — ATP binding
- GO:0030983 — Molecular Function — mismatched DNA binding
Family Introduction
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn033551
- Arabidopsis thaliana: AT3G18524, AT3G20475
- Arachis hypogaea: Ahy020784
- Gossypium arboreum: Cotton_A_40092_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A09G0455
- Juglans regia: WALNUT_00013425-RA
- Lotus japonicus: Lj0g3v0089699.1
- Nicotiana benthamiana: Niben101Scf16660g01003.1
- Nicotiana tabacum: XP_016496187.1, XP_016434821.1
- Oryza sativa: MSH2, OsMSH6, OsMSH4
- Petunia inflata: Peinf101Scf00500g01046.1
- Solanum melongena: Sme2.5_03124.1_g00002.1
- Triticum aestivum: TaMSH7-3D;Ph2
Sequences
CDS Sequence:
- >CA06g18030|Capsicum_annuum|MYB_related|CA06g18030
ATGGATGAAAAATTAGAGGAACAGAGCAAGCTACCTGAGCTTAAACTTGATGCAAGGCAAGCTCAAGGGTTTCTCACATTCTTCAAAACCCTACCCAAGGACCTTAGGGCAGTTCGTCTCTTTGATCGTCGGGACTATTATACTGCTCATGGAGATGATGCAACTTTCATTGCAAAGACATATTACCATACAACAGCTGCTTTACGACAGTTGGGTAATGGAGTTGATGCTCTTTCCAGTGTTAGTGTGAGTAGAAACATGTTTGAAACAATATCTCGTGACATTCTCTTAGAGAGAATGGATCGTACTCTAGAATTGTATGAGGGCAGTGGTTCAAACTGGAGACTGGTCAAAAGTGGCACCCCAGGAAATTTTGGAAGTTTTGAGGATATTCTGTTTGCTAATAATGAAATGCAAGATTCTCCGGCTATTGTTGCGCTTGCGCCAAACTTTGATCAGAATGGATGTACAGTTGGGTTAGGCTATGTTGATATTACTAAGAGAGTCCTTGGATTGGCAGAATTTCTAGATGATAGCCACTTCACCAATTTGGAATCTGCTTTGGTTGCTCTTGGTTGCAGGGAATGTCTTGTACCAACAGAGACTGGGAAATCCAGTGAGTACAGGCCTCTGTATGATGCAATATCGAGATGTGGCGTGATGGTAACTGAAAGAAAGAAAACTGAATTTAAAGGGAGGGATTTGGTACAGGATCTCGGTAGGCTTGTCAAGGGTTCAGTAGAACCTGTTAGAGATTTAGTCTCTGGTTTTGAATGTGCGGCAGGCGCTTTGGGGTGCATACTTTCCTATGCAGAACTACTTGCGGATGATAGCAATTATGGAAACTACACAGTCAAACAATACAACCTCAATAGTTACATGAGATTAGATTCTGCTGCTATGAGAGCACTGAATGTTATGGAAAGCAAATCAGATGCTAATAAAAACTTTAGCTTGTTCGGTCTCATGAATAGAACGTGCACTGCTGGAATGGGTAAAAGGTTATTGCACATGTGGCTGAAACAGCCGTTACTGGATGTAGATGAGATTAACTGTAGACTGGATTTAGTTCAAGCATTTGTGGAGGATGCCGCACTTCGCCAAGATTTGAGGCAGCATCTGAAAAGAATTTCAGATATTGAGCGGCTGACACGCAATCTTGAGAGGAAAAGAGCCGGCCTACTGCACGTTGTAAAACTCTATCAGTCAAGCATCAGAATACCATATATCAAAAGTGTTTTGGAAAGATATGATGGGCAATTTGCAACACTTATCAGGGAAAGGTATATTGAGTCTCTTGAGAAATGGAGTGATGATCATCACCTGAATAAGTTCACTGCTCTTGTGGAAACTGCTGTCGACCTTGATCAACTTGAAAATGGAGAATACATGATTTCTTCTGCATATGACCCAAGCTTATCTGCTCTGAAGGATGAGCAGGAGACACTGGAACAACAGATTCATTATTTGCACAAACAAACTGCCAATGATCTTGATCTACCTATGGATAAGTCTCTTAAACTAGATAAAGGAACACAATTTGGACATGTCTTCAGAATTACCAAGAAAGAAGAACCAAAAGTCAGGAGGCAGCTAAACTCTCACTACATTGTTCTTGAAACACGTAAGGATGGGGTAAAGTTCACCAATACAAAACTCAAAAAATTAGGGGATCGGTACCAGAAGATTGTAGACGAGTATAAGAGCTGTCAGAAAGAACTGGTAGCTCGGGTAGTTCAAACAGTTGCGAGTTTCTCCGAGGTGTTTGAAGGTATAGCTGGTTCACTTTCTGAGTTGGATGTGCTACTAAGTTTTGCGGATTTGGCTTCCAGTTGCCCAACTGCCTACACAAGACCAAATATCAGTCCGCCAGATGTGGGAGATATTGTACTTGAAGGGTGTAGACATCCTTGCGTGGAAGCTCAAGACTGGGTTAACTTCATCCCTAATGACTGTAGACTAGTTAGGGGTGAAAGTTGGTTTCAGATTATCACAGGCCCTAACATGGGTGGAAAGTCGACCTACATTCGTCAGGTTGGTGTGAATGTCCTGATGGCCCAAGTTGGCTCATTTATTCCATGTGACAATGCCACCATTTCTATTCGAGATTGCATTTTTGCTCGTGTTGGCGCTGGAGATTGCCAGCTGAGGGGGGTTTCTACTTTTATGCAAGAGATGCTTGAGACTGCATCGATCTTGAAAGGAGCTACTAATAGATCATTGATTATAATTGATGAGTTGGGCCGTGGGACATCGACTTATGATGGCTTTGGTTTAGCTTGGGCTATTTGTGAGCACATTGTTGAAGAAATTAAAGCACCAACATTGTTTGCCACTCACTTTCATGAGCTGACTGCATTGGCCAATGAGAATGGAAACAATGGGCATAAGCAAATTGCTGGTGTGGCAAATTTTCATGTCAGTGCACACATTGACTCTTCTAGTCGCAAGCTAACTATGCTTTACAAGGTTCAACCAGGTGCTTGTGATCAAAGTTTTGGCATTCACGTTGCGGAGTTTGCCAATTTTCCACAAAGTGTTGTGGCCCTGGCCAGAGCTAAGGCATCTGAGTTGGAGGATTTCTCTCCTAATACAATAATGCCAAATGACTGTAAAGAGGCAGCTTCAAAGCGGAAGAGGGAATTTGACCCACATGACGTGTCTAGAGGTACTGCCCGAGCTCGTCAGTTCTTACAGGATTTCACCCAGTTTCCACTGGATAAGATGGATCTAGACGAGGCCTTGCAACAGTTGCGCAAAATGAGGACCAACCTGGAGAGGGATGCAGTTGACATGGATGATGTTACAGCCATTGAATATGGCTATGTTCCAATCCCAAATTATACTGTAGAGGAAAATAGCTATGGCTATTCTAGAGTTTCGAGGGATGATTGGCAGTCCAATGGGAATGAGTTTGCAGAGACAGCCCAATGCCCAGAGAGAAGAAAAGGGACACCATGGACTAAAGAAGAGCACAGGTTATTTTTGCTTGGCTTAGAGACGTATGGGAAAGGCGATTGGAGAAGCATTTCAAGGAACATTGTGATATCAAGGACGCCATCTCAAGTGGCCACTCATGCTCAAAAGTACTTTAACCGTTTGAAGAAAAACCAGCATCCATGA
Protein Sequence:
- >CA06g18030|Capsicum_annuum|MYB_related|CA06g18030
MDEKLEEQSKLPELKLDARQAQGFLTFFKTLPKDLRAVRLFDRRDYYTAHGDDATFIAKTYYHTTAALRQLGNGVDALSSVSVSRNMFETISRDILLERMDRTLELYEGSGSNWRLVKSGTPGNFGSFEDILFANNEMQDSPAIVALAPNFDQNGCTVGLGYVDITKRVLGLAEFLDDSHFTNLESALVALGCRECLVPTETGKSSEYRPLYDAISRCGVMVTERKKTEFKGRDLVQDLGRLVKGSVEPVRDLVSGFECAAGALGCILSYAELLADDSNYGNYTVKQYNLNSYMRLDSAAMRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAFVEDAALRQDLRQHLKRISDIERLTRNLERKRAGLLHVVKLYQSSIRIPYIKSVLERYDGQFATLIRERYIESLEKWSDDHHLNKFTALVETAVDLDQLENGEYMISSAYDPSLSALKDEQETLEQQIHYLHKQTANDLDLPMDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLETRKDGVKFTNTKLKKLGDRYQKIVDEYKSCQKELVARVVQTVASFSEVFEGIAGSLSELDVLLSFADLASSCPTAYTRPNISPPDVGDIVLEGCRHPCVEAQDWVNFIPNDCRLVRGESWFQIITGPNMGGKSTYIRQVGVNVLMAQVGSFIPCDNATISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTALANENGNNGHKQIAGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEFANFPQSVVALARAKASELEDFSPNTIMPNDCKEAASKRKREFDPHDVSRGTARARQFLQDFTQFPLDKMDLDEALQQLRKMRTNLERDAVDMDDVTAIEYGYVPIPNYTVEENSYGYSRVSRDDWQSNGNEFAETAQCPERRKGTPWTKEEHRLFLLGLETYGKGDWRSISRNIVISRTPSQVATHAQKYFNRLKKNQHP*