Gene Details:
- Gene ID: Bostr.7867s1302.3.p
- Gene Family: MYB_related Family
- Description: MYB_related Family protein
- Species: Boechera stricta
- Source: MYB_related family gene from PlantTFDB
Protein Features:
- Gene3D: G3DSA:4.10.60.10
- PROSITE profile: PS51294
- SuperFamily: SSF46689
- TIGRFAMs: TIGR01557
- SMART: SM00717
- Gene3D: G3DSA:1.10.10.60
- Pfam: PF00249
- InterPro: IPR001878 IPR017930 IPR009057 IPR006447 IPR001005
Annotation Proteins:
- Refseq: XP_020873110.1 — SWI/SNF complex subunit SWI3D
- Swissprot: Q8VY05 — SWI3D_ARATH; SWI/SNF complex subunit SWI3D
- TrEMBL: D7MF14 — D7MF14_ARALL; Uncharacterized protein
- STRING: Bostr.7867s1302.1.p — (Boechera stricta)
Gene Ontology:
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction:
- A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.
Literature:
- A novel leaf-specific myb-related protein with a single binding repeat. DOI: 10.1016/s0378-1119(96)00521-5 ; PMID: 8996094
Sequences:
CDS Sequence:
- >Bostr.7867s1302.3.p|Boechera_stricta|MYB_related|Bostr.7867s1302.3.p
ATGAGGAAGTTTCATTCCAATCCGAACATACAAATAGAACTAAAAGACTTAACAGAACTCGAGGTTGGAGACTCGGACGCAAAGCAAGAGGTGATGGAGTTCTTGGACTACTGGGGCTTAATCAATTTCCACCCATTTCCACCCTCAGATGCTGGTTCTACGGCTTCTGATCATGATGATTTAGGGGATAAGGAGTCACTGCTTAACAGTTTATATCGATTTCAAGCTGATGAGGCTTGCCCTCCTCCTGTTCACAAGCCTCGTCTCACAGCACAAGCTACGCTATCAGGGTTGTTTCCAGATCCGATGGCTGCTGATGAATTGCTAAAGCAAGAGGGTCCAGCAGTCGAATATCACTGCAATTCTTGTTCAGCTGATTGCTCTCGTAAGCGCTACCACTGCCCGAAACAGGCAGATTTTGACTTATGTACGGAATGCTTTAACAGTGGCAAGTTCAGCTCAGATATGTCATCTTCTGATTTTATATTAATGGAGCCTGCTGAGGCCCCTGGCGTTGGTAGTGGGAAGTGGACTGATCAAGAGACTCTTCTTCTCCTTGAAGCTTTAGAAATCTTCAAGGAAAATTGGAATGAGATCGCAGAGCATGTTGCTACAAAAACAAAAGCTCAGTGTATGCTTCATTTTCTTCAAATGCCAATCGATGATGCATTTCTTGATCAAATTGACTATAAAGATCCAATCAGAAAAGACACGACAGATTTAGCTTTGTCTAAAGATGATCAATCTGTCCTAAAAGATGCACCTGATGAGGCAGAGAATAAGAAACGTGTTGATGAAGATGAGACTATGAAGGAAGTTCCAGAACCAGAAGTTGACAATGAAGGTAAAGTCTCTCAGGAATCTTCGAAGCCTGAAGAAACTAATGAAGTGGAAGCAGACCAGAAAACACCCAAACTAGAAACCGTCATTGATGAAAGATGTAAGGATGAGACTGACGAAAACATTGCTCTGAAAGCTCTTGCTGAAGCTTTTGAAGATGTTGGTTATTCCTCCACACCTGAAGCCTCGTTTTCCTTTGCTGATTTAGGAAACCCTGTCATGGGACTGGCAGCCTTTCTGGTGAGATTGGCAGGATCTGATGTTGCTACTGCGTCAGCCCGGGCTTCCATAAAATCTCTTCACAGCAATTCTGGATTGTTACTTGCTACAAGACATTGTTATATTCTGGAAGATCCACCAGACAACAAGAAGGATTCAACTGAATCAAAAAGTGCGGATGCAGAGGGGAATGATGATAATGCCCATAAAGATGAGCAACCAGAAGAAAAAAGCCAGAAAGCAGAAGAGGTCTCCTTGAATTCAGATGATAAGGAAATGCCATATACTGACACAGGTAAAGAAAATATGGATTCAGTCTCTGAAGAAAAGCAACCTGGTTCTCAAACTAAAAATTCTACTACAAAACCAGATGCCGTACAAGAAAAAAGATCTAGTAAGCCAGTCACAACTGACAATTCAGAGAAACCAGCAGATATAATATGTCCATCGCAGGACAAATGTTCAGGGAAGGAGCTTCAAGAACCTTTGAAGGATGTGAATAAGCTTTCTAGTGAAAATAAAGACGCCTCTCAAGCAACTATCTCCCAGTCAGCTGCAGATGCTTCTCAGCCAGAAGCATCCAGAGATGTGGAGATGAAGGATACACTACAGTCAGAGAAGGATCCTCAAGATGTAGTCAAAACAGTAGGAGAGGAGGTTCAACAGGCTAAGGAGGAGGGTGCAAAGGATGTTCTTAGTACTCCAGACACGTCTGTTGTCCAGCAGCCCATTGGATCAGCTTCTGCACCGGAAAATGGAACAGCTGGTGGAAATCCAAATAAAGAAGGAAAGAAAGAGAAGGATTTTTGTGAAGGGACAAAAGACAAACATAACATCGAGAAGCTTAAGCGCGCAGCCATCTCCGCTATTTCAGCCGCAGCAGTTAAGGCAAAGAATCTTGCAAAGCAAGAAGAAGATCAAATCCGACAACTTTCTGGATCATTGATAGAGAAGCAGTTACATAAACTAGAAGCAAAGCTATCTATCTTCAATGAAGCTGAAAGCTTGACAGTGAGGGTAAGAGAGCAATTAGAAAGGTCAAGGCAACGGCTATATCATGAAAGGGCTCAGATCATAGCAGCTCGACTTGGTGTCCCACCTTCAATGTCTTCAAAAGCATCGTTACCAACAAACAGAATCGCTGCAAATTTTGCTAATGTAGCTCCAAGGCCTCCCTTGGGCATGGCCTTTCCACGCCCACCAATGCCAAGGCCTCCTCCAGGTTTTACTGTTCCTGGTTCTTTTGTAGCTGCTACAACAATGACCGGAAGCTCAGATCCGTCTCCAGGTTCAGACAATGTTTCTTCGGTTTAG
Protein Sequence:
- >Bostr.7867s1302.3.p|Boechera_stricta|MYB_related|Bostr.7867s1302.3.p
MRKFHSNPNIQIELKDLTELEVGDSDAKQEVMEFLDYWGLINFHPFPPSDAGSTASDHDDLGDKESLLNSLYRFQADEACPPPVHKPRLTAQATLSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIDDAFLDQIDYKDPIRKDTTDLALSKDDQSVLKDAPDEAENKKRVDEDETMKEVPEPEVDNEGKVSQESSKPEETNEVEADQKTPKLETVIDERCKDETDENIALKALAEAFEDVGYSSTPEASFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGLLLATRHCYILEDPPDNKKDSTESKSADAEGNDDNAHKDEQPEEKSQKAEEVSLNSDDKEMPYTDTGKENMDSVSEEKQPGSQTKNSTTKPDAVQEKRSSKPVTTDNSEKPADIICPSQDKCSGKELQEPLKDVNKLSSENKDASQATISQSAADASQPEASRDVEMKDTLQSEKDPQDVVKTVGEEVQQAKEEGAKDVLSTPDTSVVQQPIGSASAPENGTAGGNPNKEGKKEKDFCEGTKDKHNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTVRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPTNRIAANFANVAPRPPLGMAFPRPPMPRPPPGFTVPGSFVAATTMTGSSDPSPGSDNVSSV*