Gene Details:

  • Gene ID: AT5G56840.1
  • Gene Family: MYB_related Family
  • Description: MYB_related Family protein
  • Species: Arabidopsis thaliana
  • Source: MYB_related family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  NP_200495.1  — myb-like transcription factor family protein
  • Swissprot:  Q7XC57  — MYBS3_ORYSJ; Transcription factor MYBS3
  • TrEMBL:  A0A178UGL6  — A0A178UGL6_ARATH; Uncharacterized protein
  • TrEMBL:  Q9FJS9  — Q9FJS9_ARATH; At5g56840
  • STRING:  AT5G56840.1  — (Arabidopsis thaliana)

Gene Ontology:

  • GO:0006338  — Biological Process — chromatin remodeling
  • GO:0006357  — Biological Process — regulation of transcription from RNA polymerase II promoter
  • GO:0035066  — Biological Process — positive regulation of histone acetylation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0003682  — Molecular Function — chromatin binding
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0003713  — Molecular Function — transcription coactivator activity
  • GO:0004402  — Molecular Function — histone acetyltransferase activity
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • A novel myb-like gene (AtmybL2) was isolated from an Arabidopsis thaliana cDNA library. The single copy gene was localised on chromosome I. A gene specific transcript is preferentially found in leaves. The predicted gene product consists of a conservative N-terminal myb-domain known to be involved in DNA-binding and a unique proline-rich C-terminal part. Remarkably, the myb-domain includes only one of the typical two or three tryptophan repeats found in other myb-like proteins.

Literature:

Sequences:

CDS Sequence:
  • >AT5G56840.1|Arabidopsis_thaliana|MYB_related|AT5G56840.1
    ATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATAACTCAAGAACATGTTCTTCTTACCAAACAAGAGTAGTTAGGCTCTTTGGTGTTCATCTAGACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAAAGAAAAGTTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTCCTTTGCTGGTTATCTCTCCGATGGTCTCGCCCATAAAACACCTGACCGCAAAAAAGGGGTTCCATGGACGGCGGAAGAGCACCGGACGTTTCTAATTGGATTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCTAGAAACTTCGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCTCAAAAATACTTTCTCCGGCAAACTACCACTCTCCATCACAAGAGACGCCGCACCAGCCTCTTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACTACTAAGAGGATATGTAATGATCATATTGGGTCGAGCTCAAAGGTTGTTTGGAAACAAGGATTACTCAATCCTCGTCTTGGATATCCAGATCCGAAAGTATCAGTATCCGGCTCGGGTAACTCCGGTGGACTCGATCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGTTACGTGA
Protein Sequence:
  • >AT5G56840.1|Arabidopsis_thaliana|MYB_related|AT5G56840.1
    MGRRCSHCGNVGHNSRTCSSYQTRVVRLFGVHLDTTSSSPPPPPPPSILAAAIKKSFSMDCLPACSSSSSSFAGYLSDGLAHKTPDRKKGVPWTAEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKYFLRQTTTLHHKRRRTSLFDMVSAGNVEENSTTKRICNDHIGSSSKVVWKQGLLNPRLGYPDPKVSVSGSGNSGGLDLELKLASIQSPESNIRPISVT