Information report for XP_010099411.1
Gene Details
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Functional Annotation
- Refseq: XP_010099411.1 — transcription factor RAX3
- Swissprot: Q9M2Y9 — RAX3_ARATH; Transcription factor RAX3
- TrEMBL: W9R9U3 — W9R9U3_9ROSA; Transcription factor RAX3
- STRING: XP_010099411.1 — (Morus notabilis)
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g036344m
- Fragaria vesca: mrna05581.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_27814_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D11G2061
- Juglans regia: WALNUT_00024108-RA, WALNUT_00006592-RA, WALNUT_00019430-RA
- Lotus japonicus: Lj2g3v1983980.1
- Malus domestica: MDP0000322479
- Manihot esculenta: Manes.13G107900.1.p, Manes.12G118600.1.p, Manes.18G051300.1.p
- Populus trichocarpa: Potri.007G007900.1
- Prunus mume: XP_008236053.1
- Prunus persica: Prupe.6G214300.1.p
- Pyrus bretschneideri: Pbr034465.1, Pbr034455.1, Pbr029876.1
- Vitis vinifera: GSVIVT01004464001
- Ziziphus jujuba: XP_015890427.1
Sequences
CDS Sequence:
- >XP_010099411.1|Morus_notabilis|MYB|XP_010099411.1
ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAAAGAGGCCCTTGGTCGCCTGAGGAAGACGCCAAACTCAAGGCCTACATTGACCAGAACGGCACCGGTGGAAACTGGATTGCTTTACCCCAGAAGATAGGGCTTAGAAGATGCGGGAAAAGCTGTCGCCTCCGGTGGCTGAATTATCTTAGGCCAAACATCAAGCATGGTGGCTTTTCTGAGGAGGAAGATAACATTATTTGCAGCCTCTACCTAAGCATCGGAAGCAGATGGTCGATTATCGCGGCACAGTTACCAGGACGGACTGATAATGATATAAAGAACTACTGGAACACGAGACTGAAGAAGAAGCTATTAGGCAAACAGTGCAGAGAGCAGGCTGCAGCTCAGGCCCGGCGGGCCAATAGCCTAATGCAAGGTCATCAACTGAAGAGATCAGAAAGTAGTACTTTTGATCATCATAATAATATCAATCTTCCTCATGGCTCGTTTTTGAATCAAACGGCACCCTACTGGCCAGACCTACCTGCGGTGCTAACCGTGCCGGTGGCCACCAATCAAAGCAGCCACGTTGTCGACGTCACCAATATCTCTCAAGTACTCAAGGAAGACGACAACGCCGGCCGCCATCAAGCCTCCATAAAGAACTTGCTGATCAAGCTCGGAGGAAGATTCTCCGAAACCGCGAGTACTGATCATCAATTCCATAACGGTACTAATTACCCTGCGGATCAGCTTTCCGCTGTCCAAGATCAAGCATATTCTCTTGATATGCTTAGTACTTATGATGCTGTAGGACCGACCATGTACCAAGGGCTTGAGAATCTTCAATCTGAGCTAAGAGAACTGATATATAGCAATCATCCACAACAAGCAGTCTTATTGGATGGTATTAGTACTAATAATTCTGATGGGTTCTGTGGAATAATGGAGCAAATGTTCACGGGAAGTACTACTACTACTGCTGCTACTACTGGAACAAGTACTACTTCTGTGGACAGCGGAAGCTGGGGAGAGATGAACAGCTCTTCCTTGGTTTTCGCGACAAATATGGTATCGGATTATGGCAACTACCAACTTCCTCATCAAGATTCTGCTTTTGAAGAGTCAAGATACTTTGAGACGAGTACAACGGCAATGTAA
Protein Sequence:
- >XP_010099411.1|Morus_notabilis|MYB|XP_010099411.1
MGRAPCCDKANVKRGPWSPEEDAKLKAYIDQNGTGGNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYLSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQCREQAAAQARRANSLMQGHQLKRSESSTFDHHNNINLPHGSFLNQTAPYWPDLPAVLTVPVATNQSSHVVDVTNISQVLKEDDNAGRHQASIKNLLIKLGGRFSETASTDHQFHNGTNYPADQLSAVQDQAYSLDMLSTYDAVGPTMYQGLENLQSELRELIYSNHPQQAVLLDGISTNNSDGFCGIMEQMFTGSTTTTAATTGTSTTSVDSGSWGEMNSSSLVFATNMVSDYGNYQLPHQDSAFEESRYFETSTTAM