Information report for XP_009802252.1
Gene Details
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Functional Annotation
- Refseq: NP_001312384.1 — myb-related protein Myb4-like
- Refseq: XP_009802252.1 — PREDICTED: myb-related protein Myb4-like
- Swissprot: Q9LTC4 — MYB15_ARATH; Transcription factor MYB15
- TrEMBL: A0A1U7YDQ0 — A0A1U7YDQ0_NICSY; myb-related protein Myb4-like
- TrEMBL: Q9SLT1 — Q9SLT1_TOBAC; Myb-related transcription factor LBM2
- STRING: XP_009802252.1 — (Nicotiana sylvestris)
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0010200 — Biological Process — response to chitin
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA06g10340, CA00g88900
- Nicotiana benthamiana: Niben101Scf03570g04002.1, Niben101Scf03064g05001.1, Niben101Scf00501g00004.1, Niben101Scf06017g02002.1
- Nicotiana tabacum: XP_016465608.1, XP_016493387.1, XP_016490215.1, XP_016487815.1
- Sesamum indicum: XP_011091315.1
- Solanum lycopersicum: Solyc06g053610.2.1, Solyc09g090130.2.1
- Solanum melongena: Sme2.5_00962.1_g00008.1, Sme2.5_00994.1_g00003.1
- Solanum tuberosum: PGSC0003DMP400028466, PGSC0003DMP400030100
Sequences
CDS Sequence:
- >XP_009802252.1|Nicotiana_sylvestris|MYB|XP_009802252.1
ATGGGGAGAGCTCCTTGTTGTGAGAAAATGGGGCTGAAAAAAGGGCCATGGACTCCTGAAGAAGATCAGATCCTCATCTCTTTCATTCAACAAAATGGCCATGGCAACTGGCGAGCCCTTCCTAAACAAGCTGGACTATTGAGATGCGGGAAAAGTTGCAGACTGCGGTGGACGAATTATTTGCGACCAGATATAAAGAGGGGAAATTTCACAAAGGAAGAAGAAGATACAATTATCCAGTTACATGAAATGCTTGGCAATAGATGGTCAGCAATAGCAGCAAAATTACCGGGACGAACAGACAATGAAATAAAAAATGTTTGGCACACCCACTTGAAGAAGAAGCTCAAAGATTATAAGCCTCCTCAGAACCCCAAAAGACACTCCAAAAATCATGATTCCAAGGGTCCTACTACTTCTGAGTCATCCAATAATTCTCATCTTACTTTTATTTACACACAAAAACACATTATTGATAGCTCAGTGCCAGCTCCTAACTCACCCCAAATTTCATCTAGTACTGAAATGTCAACTGTGACACTAGTCGATGATCATCAAATGGTGATTAAGCAAGAAGAAATGGAGTCGTCGGAGTATTTTCCAGAGATCGATGAGAGTTTTTGGACGGACAAATTATCAACGGACAATAACTGGAGTAATACTCATGATCATGTTATGGTTACTGCTGATCAAGAATTACAAGTTCAATTACCATTTTCCAGTTTGAAGGAAGAAAATGTGGACATGTTGACTACAAAAATGGAGGATGACATGGACTTTTGGTACAATGTTTTCATCAAGACTGATGACTTGCCAGAATTACCAGAATTTTGA
Protein Sequence:
- >XP_009802252.1|Nicotiana_sylvestris|MYB|XP_009802252.1
MGRAPCCEKMGLKKGPWTPEEDQILISFIQQNGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTKEEEDTIIQLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLKDYKPPQNPKRHSKNHDSKGPTTSESSNNSHLTFIYTQKHIIDSSVPAPNSPQISSSTEMSTVTLVDDHQMVIKQEEMESSEYFPEIDESFWTDKLSTDNNWSNTHDHVMVTADQELQVQLPFSSLKEENVDMLTTKMEDDMDFWYNVFIKTDDLPELPEF