Information report for Tp57577_TGAC_v2_mRNA9113
Gene Details
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Functional Annotation
- Refseq: XP_003618530.1 — transcription factor MYB16
- Swissprot: Q9LXF1 — MYB16_ARATH; Transcription factor MYB16
- TrEMBL: G7KKX7 — G7KKX7_MEDTR; Myb transcription factor mixta-like protein
- STRING: AES74748 — (Medicago truncatula)
- GO:0000902 — Biological Process — cell morphogenesis
- GO:0009651 — Biological Process — response to salt stress
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004489411.1
- Glycine max: Glyma.19G024700.1.p
- Gossypium arboreum: Cotton_A_35093_BGI-A2_v1.0, Cotton_A_05028_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G3179, Gh_D04G0428, Gh_A10G1375
- Juglans regia: WALNUT_00019510-RA
- Lotus japonicus: Lj1g3v2979210.1
- Manihot esculenta: Manes.01G093300.1.p, Manes.02G047900.1.p, Manes.02G047900.2.p
- Medicago truncatula: Medtr6g012690.1
- Populus trichocarpa: Potri.017G086300.2, Potri.017G086300.1
- Prunus mume: XP_008230795.1
- Prunus persica: Prupe.3G264500.1.p
- Pyrus bretschneideri: Pbr019293.1, Pbr038434.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA9113|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA9113
ATGGGAAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAGAAACTCTTAGCTTATATTGACGAACATGGTCATGGAAGTTGGCGCGCTTTACCGGCTAGAGCCGGACTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCTGATATTAAGAGAGGAAAATTTAGTTTGCAAGAAGAACAAACTATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGTCAAAGAGAACAGATAATGAGATAAAAAATTATTGGAACACACATCTTAAGAAAAGATTAACAAAAATGGGAATTGATCCTATTACACACAAGCCTAAAAATGATGCTCTTCTTTCATCAAGTGAAAATGCTAATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTCACATAATCATAATCATAAGCTAGAATTTGGTGGAAATTCTCATTTGAAGGCTTGGAATATTAATCTTGAATCTCCTACTTCAACTTTATCTTACAATGAAAATGTGGCACCAATTATTACTAGTGAAGAAATAGGAGGTGCAAATAGCAACATCAACAACAAAAAAAACAACAATGAGGATGAAAATATTAATAATGATGAAAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGGACAAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGAACAATGGAAGGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAGGTGTTGGTGATGTTATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAAACAAATTCTGAAGATTTGAGTTTGTCAGAAAGTGGAGGTGAATCTAACAATGGTGGTGGTGATGGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTGATTCACCAATGTTTTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA9113|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA9113
MGRSPCCDKVGLKKGPWTPEEDQKLLAYIDEHGHGSWRALPARAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPITHKPKNDALLSSSENANSKTASNLSHMAQWESARLEAEARLVRESKIRSHNHNHKLEFGGNSHLKAWNINLESPTSTLSYNENVAPIITSEEIGGANSNINNKKNNNEDENINNDENNVVVSMIEFVGTNSSSIVKEEGGDDQEQWKGYESSLTFTSNLHHELTMSMDQGVGDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGGDGGSGSEFYEDNNNYWNSILNLVNSSPSDSPMF*