Information report for Tp57577_TGAC_v2_mRNA18333
Gene Details
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Functional Annotation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy014038
- Cajanus cajan: C.cajan_13758
- Cicer arietinum: XP_004491297.1
- Glycine max: Glyma.03G107400.1.p, Glyma.11G165800.1.p, Glyma.10G121700.1.p, Glyma.18G179400.1.p
- Medicago truncatula: Medtr1g083630.1, Medtr5g088640.1, Medtr5g488210.1, Medtr5g088150.1, Medtr5g088080.1, Medtr5g088610.1
- Raphanus raphanistrum: RrC5547_p3
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA18333|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA18333
TTGATCATGGAGAAAAAGTTGAGAAAAGGACCATGGTCAAAACAAGAGGATGAAATATTAATTAAATATGTTGAAAGATATGGACCGGAAAAGTGGAATTTATTACAAAGGGTAACTGGACTTCCTCGAAAAGGCAACAGTTGTCGTCTAAGATGGCTTAATCATCTTAATCCATATTTGAAAAAGGGAAAATTAAGTGAAGAAGAAAAACAGAAAATCATTCAACTTCGTCAACTTGGAATCAATTGGTTTGAAATTGTTAAACAGCTTCCTGGAAGAACAGACAATGAGATAAAGAATTTTTATAACATTAATGAGAGAAAGAAACATAAAATGGAGAGTGGCAATCGAGAATGTCAGAAAAAGAAAAAGAAAATAAAGTATTTGTCACTCAACGAAGAAAATAAAGCCCGTGATAATGAGTTGAATAACAATGGAGAATGTAGCAACCAGCAACAAGGCATTTCTGACACACATCAAATGGAAATCATGAAAGACTCGTTCCATATTCCAATTATGCAACCTTCAAATATGCTTTGCAATAATGTGCCAAGTACTTCTACAGTCAATAATTCTTCTCCAACAATCATTGATAGGGGTGAAGCTCCTTTTATGCCAACTGACATGGTATCAAATGTGCCTCTATTTCAAGAGTTCCAATCTTCTGAATCTCCACTTCATCCATACACTTCTATAAGCGATAAACCTTCCCCAATATTTATTGATAGGAATGAAACTTCTTTTATTTCTAAGGATATGGAATCAAACCTGCCTCTATTCCCAGAAAGTATGAACTTTGAATCTTTTGAATCTCTAATTCAAAAGTATCCTCCACTCCCACTTCGATCATCTGAGGAGATTCAACGAGAGCAGCTGGAACTAGATTCTCCATTCAACAATAATTTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTGAGACAAGATTGATTGATGAAAATGGGATGAAGCCAACATATTTGAAGAAAGATGAATCAAACAATGAAGACTTGATAGATTTGTTGGATAGCTTAGTTAGAAAATGCATGTTGGGTGACTACGAAATTGGAGAATTTAAGCTGAAGTGGGCACAAGTTGTCGATTCGATTGGATTAAAAGACAACAATTGGATCAAAGAAACATATGCTAAGAGAAAGACATGGGCAATAACACACATACGTGGACAAATGTTTGCAGGGTTCAGAACTACCTTGCGATATAAGGGGTTGCATTTTGAGTTGGGGAAGTTTGTTAATTCTCGCTACAACTTGTCTGATTTTCTTCTACACTTTCACCGTTGTCTCAATTACATGCGGTGTAAAGAGGTAGAAGCAGATTTTGCATCTGATTATGGTGAACCAATTATAATCCAGAGATCTTCTTCAATGACCATAAATGGATTCAAGGAAACGCGTGGATACAAAATCTACGAACTTACTAAGTATAGGAAGCCGGAAAAAGTGTGGCGTGTATCATTTAATCGTGATGGTGACATATTAAAGTGCTCATGTCAGAGGATGGAGTCGTTTGGAATTCCATGTGAGCATATCATTGCATTGCTTGTTTTTAGGCATTATGTTGAGTTGCCTAAATCACTTGTGCTGAATAGATACACATATTAG
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA18333|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA18333
LIMEKKLRKGPWSKQEDEILIKYVERYGPEKWNLLQRVTGLPRKGNSCRLRWLNHLNPYLKKGKLSEEEKQKIIQLRQLGINWFEIVKQLPGRTDNEIKNFYNINERKKHKMESGNRECQKKKKKIKYLSLNEENKARDNELNNNGECSNQQQGISDTHQMEIMKDSFHIPIMQPSNMLCNNVPSTSTVNNSSPTIIDRGEAPFMPTDMVSNVPLFQEFQSSESPLHPYTSISDKPSPIFIDRNETSFISKDMESNLPLFPESMNFESFESLIQKYPPLPLRSSEEIQREQLELDSPFNNNLMXXXXXXXXXXXXCETRLIDENGMKPTYLKKDESNNEDLIDLLDSLVRKCMLGDYEIGEFKLKWAQVVDSIGLKDNNWIKETYAKRKTWAITHIRGQMFAGFRTTLRYKGLHFELGKFVNSRYNLSDFLLHFHRCLNYMRCKEVEADFASDYGEPIIIQRSSSMTINGFKETRGYKIYELTKYRKPEKVWRVSFNRDGDILKCSCQRMESFGIPCEHIIALLVFRHYVELPKSLVLNRYTY*