Information report for Tp57577_TGAC_v2_mRNA12591
Gene Details
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Functional Annotation
- Refseq: XP_028195962.1 — transcription factor GAMYB-like isoform X2
- TrEMBL: A0A2K3L7V6 — A0A2K3L7V6_TRIPR; Transcription factor GAMYB-like protein (Fragment)
- STRING: GLYMA13G04031.2 — (Glycine max)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Beta vulgaris: Bv4_074370_ygxg.t1
- Cajanus cajan: C.cajan_00744
- Cicer arietinum: XP_004493026.1, XP_012573637.1
- Glycine max: Glyma.13G073400.3.p, Glyma.13G073400.2.p, Glyma.13G073400.1.p, Glyma.20G047600.1.p
- Lotus japonicus: Lj0g3v0080089.2, Lj0g3v0080089.1
- Manihot esculenta: Manes.02G133900.2.p, Manes.02G133900.1.p
- Medicago truncatula: Medtr1g021230.1
- Populus trichocarpa: Potri.009G018700.1, Potri.001G224500.3
- Ricinus communis: 29785.m000932
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA12591|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA12591
ATGAGCACCACTTCAGGTGGTGACGATGGCCGCAAAGCGCTAAAGGGTAAGAAGATGATGTCATTGTCAAGTGGGGATGATAGTCAAATGCTAAAGCATAATCGGCCATCATCATCAAGTGGAGATGTTGACTGCAAGAGAATAAAGCGTAGTGAGTCGGCATTACTAGGCGAAGAAGATGATCAAGGACGTAACGTGGAAGGAGAAGGTATATTGAGAGGCATGACTAGCACTTCAAGTGTAGATAATGGTCACAAAAAGATAAAGCGTAGTTGGTCATCATCATCAAGTTTGGATGATGACTGCAAAAGGATAAAGCCTAGTCAGTCATTATTATCAGGCGAGGAAGATGATGACGAAGATGATCAAGGAGGTGACTCAGGAGAAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACATCGGCAGAAGATGAAATTTTGGTAGAACATGTTAAGAAATACGGATTGGGAAATTGGAATGCGGTGCAAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTACACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGCCGATCCAGAAAATGGCGATGCAAATGAAGCTAGCCAATGTGATGAATCAGAAAACTACAATATACCTGTTGTGGAATTTGAAGATTATAAATTCCACCCAGGTATGATACCACCATGTTTTGATATTACCACCTTGATCGAGCGTCCCTCAAAGCGGCCTCTTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTATTTGATCCGTACGGCAAATATCCTATGTTGGCTCCTCCATGTGATCCGAGTTTTTACACCGACGCTCAGTTTCATGGATACGATAACATTCTGGACGGTATTCACACCGTACCAAATGTCTCGTCTTCTGAGCCCTTGTACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACCTCACTTGAGTCTATCGACACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCTGTATCAGTCAGATCCAACTTCTCCAGATAGCAATCATTTCCTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGAGAACACCGTGCCAAATGAAGCCGACAATAGTACACAGTGGAACATACTAGATGATCAGTCTGGTGCTTCATTTCTGCCATCTGACTATAATGCTCATCACATTAACATGTGGTCAATTGATCGATCCCACTTGGTCGAAACCACTCAAGATCATGGTAATTTGGATCAAATAGATTTTGCGCGCCCAGATGCTATGCTTGAATCCGATTGGCGCATGAAGAATAAATGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA12591|Trifolium_pratense|MYB|Tp57577_TGAC_v2_mRNA12591
MSTTSGGDDGRKALKGKKMMSLSSGDDSQMLKHNRPSSSSGDVDCKRIKRSESALLGEEDDQGRNVEGEGILRGMTSTSSVDNGHKKIKRSWSSSSSLDDDCKRIKPSQSLLSGEEDDDEDDQGGDSGEGEEGSLKKGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKADPENGDANEASQCDESENYNIPVVEFEDYKFHPGMIPPCFDITTLIERPSKRPLESNMIYSDLGGCSSSAAVQEVFDPYGKYPMLAPPCDPSFYTDAQFHGYDNILDGIHTVPNVSSSEPLYGSMRYELPSLQYLQTQQGSWSVSPLTSLESIDTMIHSSPNEPYQSSPNELYQSDPTSPDSNHFLDTILHSNDDSFQEKIENTVPNEADNSTQWNILDDQSGASFLPSDYNAHHINMWSIDRSHLVETTQDHGNLDQIDFARPDAMLESDWRMKNK*