Information report for Thhalv10013018m
Gene Details
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Functional Annotation
- Refseq: XP_006401500.1 — transcription factor MYB120
- Swissprot: Q94FL7 — MY120_ARATH; Transcription factor MYB120
- TrEMBL: V4LST9 — V4LST9_EUTSA; Uncharacterized protein
- STRING: XP_006401500.1 — (Eutrema salsugineum)
- GO:0009860 — Biological Process — pollen tube growth
- GO:0005634 — Cellular Component — nucleus
- GO:0090406 — Cellular Component — pollen tube
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT5G55020.1, AT4G26930.1
- Brassica napus: GSBRNA2T00033843001, GSBRNA2T00075836001, GSBRNA2T00060517001, GSBRNA2T00009670001, GSBRNA2T00013029001
- Brassica oleracea: XP_013608183.1, XP_013628926.1
- Brassica rapa: XP_009120026.1, XP_009127041.1, XP_009132411.1
- Gossypium hirsutum: Gh_A11G2522, Gh_D01G0645
- Malus domestica: MDP0000179306
- Raphanus raphanistrum: RrC30_p7
Sequences
CDS Sequence:
- >Thhalv10013018m|Eutrema_salsugineum|MYB|Thhalv10013018m
ATGATCTTGTACGGAGGAGGAGCAGGGAAGGATGGTGGATCCACCAATCACATATCAGACGGAGGAGGAGGAGTGGTACTGAAGAAAGGGCCATGGACGGCGGCGGAAGATGAGATACTTGCAGCGTACGTTAGAGAGAACGGCGAAGGAAACTGGAACGCCGTTCAGAAAAACACAGGCTTGGCTCGTTGCGGCAAAAGCTGCCGTCTCCGTTGGGCCAATCACCTCCGCCCAAACCTCAAAAAAGGCTCTTTCACCGGCGACGAAGAACGTCTCATTATCCAACTTCATGCTCAGCTTGGTAACAAATGGGCTCGCATGGCCGCTCAGTTGCCGGGAAGAACAGACAACGAGATCAAGAACTATTGGAACACAAGGTTGAAACGTCTTCAACGCCAAGGACTTCCTCTTTACCCTCCAGATATTATCCCTAACCATCAACTCCATCCACATCCACATCATCATCAACACCATCATCATCAACATAACCATCATCAACATCAACAACATCATCAACACCAGCATCAGCATCAACATCATCAACATCAGCAAATGTATTTCCAACCACAATCTTCACAACCAAACACACCTTCATCTTCTCCTCTTCCATCTCCAACACCAGTAAACGCAAACCCCTCTTCATCTTTCACTTTCCATACCACAAACGCATCAACCGCTAATCTCCTCCATCCTCTTAGCCCTCACACTCCAAACACACCTCAAACTCCTTCACAACTCTCTTCCACGCCGCCTCCACCGCCACTTTCCTCTCCTTTATCTTCACCTCGCAACAACCAATACCCTACTCTTCCTCTCTTTGCCCTCCCGCGTTCCCAAATCAACAACAATAACAATAACGCGAATTTCACTTTCCCTAGACCTCCACCTCTCCTCCAACAGCCTTCAACGCTACTCGCCAAACGCTACAACAATGCTAACGCTCCTCCTTTCAATTGCATCAACCGTGTTTCAACCGCACCATTTTCCCCTGTTTCAAGAGACTCTTACACTTCTTTTCTAACATTACCTTTCTCTTCCCCTACCGCTCAAACCGCTCAAACCGCTACTTACCATAACTCTAACAACAATTACTCTTCCTCTCCTTCTTTCTCTTTAAACCCTTCTCCTTCTTCTTACCCTACAGCAACTTCTTCCCCAAGCTTTCTGCACTCCCATTACACTCCTCCTTCTTCCACCTCTTTTCAAACCAACCCGGTTTACTCCAATATGAAACAAGAGCTCCCTTCAAACCAAGTTTCCCAAGTTAATTCATTTAATGTCAACAACTTCACAAACGACAATGAGAAGCAGAACAGTGTCAGTATTCACAGAAGAAGTATTAGCTGCAGCCTCTTAGAGGATGTCCTCGAAGAAGCCGAAGCTCTAGCTGGTGGAGGCGGAGACCGACCTCCAAAACGTAGACAACTCACAGCTTCCCCTCCTAACCACCACAACAGTAACAACAACAACAATAATGACAACTTCTTCTCGGTTAGTTTCGGACAATATGATTCTTCTGAAAACTTATGTTCCTTACAAGATTTGAAATCAAAGGAAGAAGAGTATCTTCAGATGAACACAATGCAAGAGGACATAGCTAAGCTTCTTGATTGGGGAAGTGATAGTGGAGAAATCTCTAATGGACAATCATCTGTTGTCACTGACGACAATCTTGTTCTTGATGTTCATCAATTCGCCTCACTATTTCCAGCTAATTCTACAGCGCCAGCAACCGCAACAAACGACGAACACAACAACAACAATAATAACAATAACTGCTCATGGGACGACTTGCATGGAATCAGCTAG
Protein Sequence:
- >Thhalv10013018m|Eutrema_salsugineum|MYB|Thhalv10013018m
MILYGGGAGKDGGSTNHISDGGGGVVLKKGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGSFTGDEERLIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRLQRQGLPLYPPDIIPNHQLHPHPHHHQHHHHQHNHHQHQQHHQHQHQHQHHQHQQMYFQPQSSQPNTPSSSPLPSPTPVNANPSSSFTFHTTNASTANLLHPLSPHTPNTPQTPSQLSSTPPPPPLSSPLSSPRNNQYPTLPLFALPRSQINNNNNNANFTFPRPPPLLQQPSTLLAKRYNNANAPPFNCINRVSTAPFSPVSRDSYTSFLTLPFSSPTAQTAQTATYHNSNNNYSSSPSFSLNPSPSSYPTATSSPSFLHSHYTPPSSTSFQTNPVYSNMKQELPSNQVSQVNSFNVNNFTNDNEKQNSVSIHRRSISCSLLEDVLEEAEALAGGGGDRPPKRRQLTASPPNHHNSNNNNNNDNFFSVSFGQYDSSENLCSLQDLKSKEEEYLQMNTMQEDIAKLLDWGSDSGEISNGQSSVVTDDNLVLDVHQFASLFPANSTAPATATNDEHNNNNNNNNCSWDDLHGIS*