Information report for Thhalv10004538m
Gene Details
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Functional Annotation
- Refseq: XP_006395328.1 — transcription factor MYB30
- Swissprot: Q9SCU7 — MYB30_ARATH; Transcription factor MYB30
- TrEMBL: E4MWQ9 — E4MWQ9_EUTHA; mRNA, clone: RTFL01-09-D13
- TrEMBL: V4KMW1 — V4KMW1_EUTSA; Uncharacterized protein
- STRING: XP_006395328.1 — (Eutrema salsugineum)
- GO:0001666 — Biological Process — response to hypoxia
- GO:0009617 — Biological Process — response to bacterium
- GO:0009626 — Biological Process — plant-type hypersensitive response
- GO:0009723 — Biological Process — response to ethylene
- GO:0009733 — Biological Process — response to auxin
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0042761 — Biological Process — very long-chain fatty acid biosynthetic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Brassica napus: GSBRNA2T00144540001, GSBRNA2T00144541001, BnaC07G0316500ZS, GSBRNA2T00142859001, BnaC02G0472600ZS, GSBRNA2T00109608001, BnaC09G0028400ZS
- Brassica oleracea: XP_013618791.1, XP_013598512.1, Bo7g087050, Bo1g090540, XP_013616367.1, Bo2g146540, XP_013607028.1, Bo9g008700
- Brassica rapa: XP_009151834.1, Bra025361
- Raphanus raphanistrum: RrC6020_p1
Sequences
CDS Sequence:
- >Thhalv10004538m|Eutrema_salsugineum|MYB|Thhalv10004538m
ATGGTGAGGCCTCCTTGTTGTGACAAAGGAGGAGTAAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATTTTAGTTACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCCACCAATACTGGGTTGCTTAGATGCAGCAAGAGTTGTAGGCTTAGATGGACAAACTATTTAAGGCCAGGAATCAAAAGAGGAAACTTCACAGAACATGAAGAAAAGATGATTGTCCATCTCCAAGCCCTCTTAGGCAATAGATGGGCTGCAATTGCGTCCTATCTTCCACAAAGAACAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAGCCAATCAAGATTCTCATCAAGAACTTGATCTATCAAGAGACCGTTCCTCGCTCTCTTCGTCTCCATCGTCCTCTTCTGCAAATTCCAACTCAAACATCTCCAGAGGCCAATGGGAAAGAAGGCTTCAAACAGATATTCACTTGGCGAAAAAGGCTCTATCTGAGGCTTTGTCTCCTGCCGTAGCACCGATCATCCCCTCGACATTCGCTACTACGACAACAACATCTTCTTCTGCTGAATCAAGACGTTCTACTTCCTCAGCTTGCGGGTTTCTTAGGACGCAAGAAACATCTGCCATTTATGCTTCGAGTACCGAGAATATAGCAAAATTGCTTAAAGGGTGGGTGAAGAACTCGCCAAAGACACACAACTCCGCGGATCAAATGGTGTCTCCAAATTCTGAGACAAAGGAAGTGATCAAGAGTAATGATGGGAAGGACTGTCCAGGGGCATTTCAGTCATTTTCGGGGTTTGAACACTTGAAAGATTGTGACTCATCATATCATCAGGCTGAAGTTTCACCTGATCATGAGACCAAACCAGACATAACCGGATGCAGTAACCAAAGTCAATGGTCATTGTTCGAGAAGTGGCTGTTTGAGGATTCCGGTGGACAGATTGGTGATATTTTATTGGATGAAAGCCCTAGTTTCTTCTGA
Protein Sequence:
- >Thhalv10004538m|Eutrema_salsugineum|MYB|Thhalv10004538m
MVRPPCCDKGGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKANQDSHQELDLSRDRSSLSSSPSSSSANSNSNISRGQWERRLQTDIHLAKKALSEALSPAVAPIIPSTFATTTTTSSSAESRRSTSSACGFLRTQETSAIYASSTENIAKLLKGWVKNSPKTHNSADQMVSPNSETKEVIKSNDGKDCPGAFQSFSGFEHLKDCDSSYHQAEVSPDHETKPDITGCSNQSQWSLFEKWLFEDSGGQIGDILLDESPSFF*