Information report for Thecc1EG036404t1
Gene Details
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Functional Annotation
- Refseq: XP_022773527.1 — transcription repressor MYB6-like isoform X1
- Refseq: XP_022773528.1 — transcription repressor MYB6-like isoform X2
- Refseq: XP_022773529.1 — transcription repressor MYB6-like isoform X2
- Refseq: XP_022773530.1 — transcription repressor MYB6-like isoform X2
- Swissprot: P81395 — MYB30_ANTMA; Myb-related protein 330
- TrEMBL: A0A061FK38 — A0A061FK38_THECC; Myb domain protein 3, putative
- STRING: EOY17258 — (Theobroma cacao)
- GO:0009611 — Biological Process — response to wounding
- GO:0009651 — Biological Process — response to salt stress
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0090378 — Biological Process — seed trichome elongation
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna25685.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_33049_BGI-A2_v1.0, Cotton_A_03997_BGI-A2_v1.0, Cotton_A_04544_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A13G1009, Gh_D13G1257, Gh_D05G2607, Gh_A05G2342, Gh_A05G2120, Gh_D05G2372
- Juglans regia: WALNUT_00027679-RA
- Manihot esculenta: Manes.02G194800.1.p, Manes.18G103600.1.p
- Populus trichocarpa: Potri.013G109300.1
- Prunus mume: XP_008219033.1
- Prunus persica: Prupe.1G551400.1.p
- Ricinus communis: 28154.m000040
- Ziziphus jujuba: XP_015886343.1, XP_015886342.1
Sequences
CDS Sequence:
- >Thecc1EG036404t1|Theobroma_cacao|MYB|Thecc1EG036404t1
ATGGGACGATCACCCTGCTGCGAAAAAGCACATACTAACAAAGGCGCCTGGACCAAAGAGGAAGACCAGCGCCTCATTGATTACATACGTGTCCATGGTGAAGGTTGCTGGCGTTCCCTCCCCAAAGCTGCCGGGCTGCTTAGATGTGGTAAGAGTTGCAGATTAAGATGGATAAACTACTTGAGGCCTGATCTTAAGAGAGGGAATTTCACTGAAGAGGAAGATGAACTTATCATCAAACTTCACAGTTTACTCGGAAACAAATGGTCTTTAATCGCTGGAAGACTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACACATCAAAAGAAAGCTTATAAGTAGAGGAATTGATCCGCAAACTCATCGTTCTTTGAATGAAACTGCCAATACAACAAACAACACGGCCAAAGCCACAGCCACAGCCACAGCAACATCACCCGCTGAATTGGATTTCAGAAACGCACCCAAAGTTGGAAAAGCCAACTTCATTACAACCCCGTCTCTGGATTTTAAATACAGTGAATTTCAAGTTAAGGCCAAGGCAGAGTCTCTTGAAGAAGGCAACTGTACCAGCAGTGGCACGACTACAGACGAAGAACAACAACAACATCTACACCACCGCCAACAACAACACAAGGACAAGTATCCAAGTAATGGGCAAGAGTTAAATTTGGAGCTTTCAATTGGGATTAGTTCTGCTGGCAAGGACTCTACTCGGGTTTCCAGTGCCAACTCTGCCGAGTCCAAACCACAGCTAGATAATCACAATTACCAGTTCCTTGGACAAGCTATGGTGGCAAAGGCTGTCTGTTTGTGTTGGCAATTAGGGTTTCAAAGAAATGAAATTTGTAGGAGCTGCCAAAATACAAATGGGTTCTATAGATATTGTAGACCTTTGGATTCATAG
Protein Sequence:
- >Thecc1EG036404t1|Theobroma_cacao|MYB|Thecc1EG036404t1
MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRSLNETANTTNNTAKATATATATSPAELDFRNAPKVGKANFITTPSLDFKYSEFQVKAKAESLEEGNCTSSGTTTDEEQQQHLHHRQQQHKDKYPSNGQELNLELSIGISSAGKDSTRVSSANSAESKPQLDNHNYQFLGQAMVAKAVCLCWQLGFQRNEICRSCQNTNGFYRYCRPLDS*