Information report for Thecc1EG012262t1
Gene Details
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Functional Annotation
- Refseq: XP_007036438.2 — PREDICTED: transcription factor DIVARICATA
- Swissprot: Q9FNN6 — SRM1_ARATH; Transcription factor SRM1
- TrEMBL: A0A061G1M0 — A0A061G1M0_THECC; Duplicated homeodomain-like superfamily protein
- STRING: EOY20939 — (Theobroma cacao)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009651 — Biological Process — response to salt stress
- GO:0009733 — Biological Process — response to auxin
- GO:0009739 — Biological Process — response to gibberellin
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0009753 — Biological Process — response to jasmonic acid
- GO:0046686 — Biological Process — response to cadmium ion
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn145641, Achn033551
- Arachis hypogaea: Ahy020784
- Cajanus cajan: C.cajan_01831
- Capsicum annuum: CA03g33870
- Citrullus lanatus: Cla018988
- Cucumis melo: MELO3C017292P1
- Cucumis sativus: Cucsa.198920.1
- Gossypium arboreum: Cotton_A_40092_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D09G0462, Gh_A09G0455
- Juglans regia: WALNUT_00013425-RA
- Populus trichocarpa: Potri.012G060300.1
- Ricinus communis: 30174.m008717
- Solanum lycopersicum: Solyc03g119740.2.1
- Solanum melongena: Sme2.5_03124.1_g00002.1
- Solanum tuberosum: PGSC0003DMP400009906
Sequences
CDS Sequence:
- >Thecc1EG012262t1|Theobroma_cacao|MYB|Thecc1EG012262t1
ATGGCAGGGACTGGTACTTGGAGCAGGGAAGTAGAGAAGGCTTTCGAAAACGCGATAGCTATGCATTGGACAGAGGAGGGGTCTGAAGAGCAATGGGAGAAGATTGCTTCAATGGTTCCTAGTAAAAGTCTTGAGGAATTGAAGCAACACTATCAACTGCTGGTGGAGGATGTTAGTGCAATAGAGGCTGGTCAGGTTCCACTTCCTAGTTATACAGGAGAGGAAGCTACATCTTCTGTAGCAAAGGATTTTCATGGATCTTCCGGAGCTGCTGCTGCTGCTGCTCCGGATAAGAGATCGAGTTCTGGTTATGGGAATGGATTTTCGGGGTTAAGCCATGATTCCTGTGGACATGGTGGGAAAGGAAGTTCGAGGTCGGACCAAGAAAGGAGGAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTTATTTCTACTGGGTTTAGACAAGTTTGGCAAAGGAGATTGGAGAAGCATTTCAAGAAACTTCGTGATATCAAGAACTCCGACACAGGTGGCTAGCCATGCACAGAAGTACTTCATCCGCTTGAATTCCATGAACAGAGACCGGCGGAGATCCAGCATCCATGACATCACCAGCGTTAACAATGGGGATACGTCTCATCAGGCCCCTATCACCGGCCAACAGGCTAACACAAACTCACCAGCTGCAGCAGCAGCCATGGGGCCGTCGGTGAAGCACAGGGCTCAGCCGCATATGCCTGGTTTAGGCATGTACGGAGCACCTGTCGGGCGTCCGGTGGCTGCTCCAGGGCATATGGCGTCCGCTGTGGGAACTCCCGTTATGCTTCCTCCCGGTCATCACCACCACCCTCCTCCCTATATCGTCCCTGTTGCTTACCCGATGGCACCGCCACCGATGCATCAATAA
Protein Sequence:
- >Thecc1EG012262t1|Theobroma_cacao|MYB|Thecc1EG012262t1
MAGTGTWSREVEKAFENAIAMHWTEEGSEEQWEKIASMVPSKSLEELKQHYQLLVEDVSAIEAGQVPLPSYTGEEATSSVAKDFHGSSGAAAAAAPDKRSSSGYGNGFSGLSHDSCGHGGKGSSRSDQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDTSHQAPITGQQANTNSPAAAAAMGPSVKHRAQPHMPGLGMYGAPVGRPVAAPGHMASAVGTPVMLPPGHHHHPPPYIVPVAYPMAPPPMHQ*