Information report for Thecc1EG004965t1
Gene Details
|
|
Functional Annotation
- Refseq: XP_007051325.1 — PREDICTED: transcription factor MYB86
- TrEMBL: A0A061DSV5 — A0A061DSV5_THECC; Myb domain protein 55
- STRING: EOX95482 — (Theobroma cacao)
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g013300m
- Glycine max: Glyma.02G006800.1.p
- Gossypium arboreum: Cotton_A_15702_BGI-A2_v1.0, Cotton_A_14077_BGI-A2_v1.0, Cotton_A_27183_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D11G1108, Gh_D07G1305, Gh_A07G1204, Gh_A08G1075, Gh_D08G1356, Gh_A11G0958
- Juglans regia: WALNUT_00002432-RA
- Manihot esculenta: Manes.05G007400.1.p, Manes.01G235800.1.p
- Populus trichocarpa: Potri.014G111200.2, Potri.014G111200.1, Potri.002G185900.1
Sequences
CDS Sequence:
- >Thecc1EG004965t1|Theobroma_cacao|MYB|Thecc1EG004965t1
ATGGGGAGGCACTCTTGCTGTTACAAGCAGAAACTGAGGAAAGGTCTTTGGTCCCCTGAAGAAGATGAGAAGCTCTTGAGGCATATTACAAAGTACGGCCATGGCTGCTGGAGCTCTGTCCCTAAGCAAGCTGGTCTGCAGAGGTGTGGAAAGAGCTGCAGGTTAAGGTGGATTAATTACTTGAGGCCTGATTTAAAGAGAGGCACATTCTCTCAGGAAGAAGAAAACCTCATAATTGAACTTCATGCAGTTTTGGGTAATAGGTGGTCCCAAATCGCTGCACAATTGCCAGGAAGAACCGACAATGAAATTAAAAATCTGTGGAACTCTTGCTTAAAGAAGAAGCTTAGGCAGAGAGGCATTGACCCTGTCACACACAAACCGCTCTCAGAGGTTGAAAATGGAGAAGACAAGAGTCAACAGACAAACAGCCGGGATAAGGCCTCCGGGGCATCTAGTGAATTGAACCTCAACACCGACAATCTTAAACCTGGAGTAACTTTACATGAACAAAGACCAACGTCAGTTACTGCACATGGTTACCAATTGGAAATGGAAGGCTCTCCCAGCTCCAAGACAATGAACAGCAGCAATAACAATAGCAACAACAACAATTTGATGACATCCACAGCCAGCAAAGACTTCTTTCTGGATAGATTTGCAGCCACTCACCATGAAAGCACAACCACAAACAGCCAGCCTTCTGATTTAGTGGGGCATCTTCCAATTCAACAATTGAACTATGCATCCAATGCCAGGCTCTCATCTACCTCAAATCCTACTCTCTGGTTCACGCAAACTAGCAAGGCTTTCGATATCAATTCTGAATTTTCCTCAAGCGCGATGTCTACCCTTCTCCCACCATTGACAAGTTCATTTCTCTCTGCTCCTGTGGGATTCAAGCCTTCTGTCTCCGTTTCCTCTGATAGCCCTTCGATGCCCTCGTTTACTGTTAATGGATCCCGCTACTGGGAAACCGGTGCCTCCGCCAATAACAGTAACAGCAGCAGCAGCACTGAGCTGCAAAGCAACAGTTCCTTCTTTGAGAATAGTTTCTCCTGGGGGTTGGCAGATTGTAGCACATCAGAGAAAGAGGCTCCAATCCCTCTAATGGAAAGCCAAGCAGAAGAAATCAAGTGGCCAGAATATCTCAATAACCCATTATTAGTGGCGGCTGCTTTGCAAAATCAAACTCCACAATCCTTATACAACATTGAGATAAAATCAGAAACACATTTCCTGACTAATAGTTCAAACAGTATGTGGCCCCATAGCCAACAGCAGCAAGAACCCTTACAAAATTCCGATATGTGTGCTAAGGATATCCAGAGACTTACGGCAACTTATGGACATATTTAG
Protein Sequence:
- >Thecc1EG004965t1|Theobroma_cacao|MYB|Thecc1EG004965t1
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKSQQTNSRDKASGASSELNLNTDNLKPGVTLHEQRPTSVTAHGYQLEMEGSPSSKTMNSSNNNSNNNNLMTSTASKDFFLDRFAATHHESTTTNSQPSDLVGHLPIQQLNYASNARLSSTSNPTLWFTQTSKAFDINSEFSSSAMSTLLPPLTSSFLSAPVGFKPSVSVSSDSPSMPSFTVNGSRYWETGASANNSNSSSSTELQSNSSFFENSFSWGLADCSTSEKEAPIPLMESQAEEIKWPEYLNNPLLVAAALQNQTPQSLYNIEIKSETHFLTNSSNSMWPHSQQQQEPLQNSDMCAKDIQRLTATYGHI*