Information report for Spipo20G0035000
Gene Details
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Functional Annotation
- Refseq: XP_023910525.1 — myb-related protein 306-like
- Swissprot: Q24JK1 — MYB96_ARATH; Transcription factor MYB96
- TrEMBL: A0A1D1Z407 — A0A1D1Z407_9ARAE; Myb-related protein 306
- STRING: XP_010258354.1 — (Nelumbo nucifera)
- GO:0009414 — Biological Process — response to water deprivation
- GO:0009651 — Biological Process — response to salt stress
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009751 — Biological Process — response to salicylic acid
- GO:0010468 — Biological Process — regulation of gene expression
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA03g30090
- Gossypium hirsutum: Gh_A12G2645
- Juglans regia: WALNUT_00026723-RA, Jr10_02130, Jr01_00260, WALNUT_00028043-RA
- Prunus mume: XP_008230764.1, XP_008239949.1
- Prunus persica: Prupe.5G193200.1.p, Prupe.3G268000.2.p, Prupe.3G268000.1.p, PRUPE_3G268000
- Salvia miltiorrhiza: SMil_00015286-RA_Salv, SMil_00029973-RA_Salv
- Vitis vinifera: VvMYB30
- Ziziphus jujuba: XP_015879369.1
Sequences
CDS Sequence:
- >Spipo20G0035000|Spirodela_polyrhiza|MYB|Spipo20G0035000
ATGGGCCGGTCGCCGTGCTGCGACAAGATAGGGGTGAAGAAGGGCCCTTGGACCCCCGAGGAAGACATCATCCTGGTCACCTACATCCAGCAACACGGCCCCGGAAACTGGAGGGCTGTTCCTACCCACACAGGTCTTCGCAGATGCAGCAAGAGCTGCAGGCTCAGGTGGACGAACTATCTAAGGCCAGGGATCAGGAGAGGCAACTTCAGTGACAAAGAGGAGAAGCTCATCGTCCACCTCCAGGCTCTTCTCGGGAACAGGTGGGCCGCCATAGCTTCATACCTCCCCGAGAGGACGGATAACGATATCAAGAACTACTGGAACACGCACCTGAAGAAGAAGTTCGGGAAGGTGGGTGAGGACGGCGTCGGCGGCGACGCCGTGAGCTCAGACAGCCACCAGTCCATGGCGAAGGGGCAGTGGGAAAGGAGGCTGCAGACTGATATCCACATGGCGAAGCAGGCCCTCCGCGAGGCACTATCCATGGAAACTCCTGCCTTCATGGCCGAGGTGGGAAAGCAGCCGTCTTCTTCCCATTCGGGCGAGTTCAACTCGGTCTTGACTAGGAGCCAGACCATGTCTTCGTCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCTACCTACGCCTCCAGCGCGGAGAACATTTCTCGCCTTCTCCAAGGCTGGATGAGGAACACGGAGACGCCGGCGGCTAGTGGGCGGGTCTCTGCCACCAGGTCCAGCTCCGAGTCGACTCAGCTTTCGTCGAATAACACCCCCGGCGACTCCGCGTGTAGCGGCGGCGTCGCCCCGCCCACAACCGCAGCCAACGGCCGGGTGGCTCCGGGCGGCCTCCATTCGCTCGCGAGGTTTGAAAGCTTCTCATCTGCGCTGCCGACGGTGGAAAACTCGGGGAGAAGGCTATTCCAGGAGGAGACCAAGCCGACGCCTCTTTCCTTGCTGCTGGAGACATGGTTGCTTGATGCCGAGGAGGGCGGGACGGGGCCTGAGTCCGTCTTGGGCATGTCCCTAGACAACAACACAGTCGAGCTATTCTGA
Protein Sequence:
- >Spipo20G0035000|Spirodela_polyrhiza|MYB|Spipo20G0035000
MGRSPCCDKIGVKKGPWTPEEDIILVTYIQQHGPGNWRAVPTHTGLRRCSKSCRLRWTNYLRPGIRRGNFSDKEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKFGKVGEDGVGGDAVSSDSHQSMAKGQWERRLQTDIHMAKQALREALSMETPAFMAEVGKQPSSSHSGEFNSVLTRSQTMSSSSAAAAAAAAAATYASSAENISRLLQGWMRNTETPAASGRVSATRSSSESTQLSSNNTPGDSACSGGVAPPTTAANGRVAPGGLHSLARFESFSSALPTVENSGRRLFQEETKPTPLSLLLETWLLDAEEGGTGPESVLGMSLDNNTVELF*