Information report for SMil_00002641-RA_Salv
Gene Details
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Functional Annotation
- Refseq: XP_011079436.1 — transcription factor MYB36-like
- TrEMBL: A0A059PRT6 — A0A059PRT6_SALMI; MYB-related transcription factor
- STRING: Gorai.009G006700.1 — (Gossypium raimondii)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_03613
- Citrus sinensis: orange1.1g017727m
- Daucus carota: DCAR_014707, DCAR_017965
- Fragaria vesca: mrna27379.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_16897_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D05G0050, Gh_A05G3989
- Malus domestica: MDP0000809452, MDP0000851495
- Musa acuminata: GSMUA_Achr5P22760_001
- Prunus mume: XP_008223663.1
- Prunus persica: Prupe.1G089700.1.p
- Pyrus bretschneideri: Pbr039676.1, Pbr003202.1
- Sesamum indicum: XP_011079436.1, XP_011070175.1
Sequences
CDS Sequence:
- >SMil_00002641-RA_Salv|Salvia_miltiorrhiza|MYB|SMil_00002641-RA_Salv
ATGGGGAGAGCTCCATGCTGTGACAAAGCCAATGTGAAGAAGGGGCCATGGTCTCCTGAGGAAGATTTCAAACTCAAATCATACATCGATCAATTCGGCACCGGAAACAATTGGATTGCTCTTCCTCAGAAAATCGGGTTGAAGAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTGAATTACTTGAGGCCCAACATCAAGCATGGTGGATTCACTGAGGAAGAAGACAACATTATTTGCAGCCTCTACATCAGCATAGGCAGCAGGTGGTCCATAATCGCGGCGCAGCTGCCCGGGAGGACGGACAACGACATCAAGAACTATTGGAACACGCGGCTAAAGAAGAAGCTCTTGGGGCGGCACAGAAAGCCGGCGCCGATCCCCGGCCAAGAAGCGGCCGGGGAAGACGCCTTCGATCTGTACAACCTCAGCAGCTCAGCTCTCGAGAGGCTGCAGCTCCACATGCAGCTGCAGTCCCTCCAAAACCCTCTCTCTCTCTTCAACAATCACCTGCAGCAGAAGATGATCCAAACCCTAGATTCCCTCAATCCGCACCAATTAATCGCCCCTCCTGCATTCGGACAAGCTCCGATGGCGGAGCAGATTAATCCCCTTTTACTCGACGAAAAATCATGCGGTTTTGCGGCGGAGGAGAATCTGCAGCCAGTTGGTGATGATGAGTTCGATTGTTTTAAGGAAATGGGCGGCGTGGAGAGGGAGAATCTTGCATGGTGGTGTAATGAATTCGAGGTGAAGTCGACGTCGTCGAGCTCGTGGGATTCGACGGCTGTGATTGATCATCAAATTTATGGGGATTATGATATGGTTCTACGGGACTGTGACGGCAAGATCGTAGCGGCGGCAGCTTATCGTGTTGGACGAACCGAAACCCTCTTGATGGGAGAACTTCATGCTCCCCTTTTGGCGGTGCACGTGGTGAGTGATGTTTCTAAAGGTTTGGATTCGCTTTGTGATGAGATGTTTGCAGCTTTTGCTCCTGCTAAAGAACATATTGTTTTTAATTTTCGCCGCCCTCGGGGAACGAGTGCACCGCCGCGCAGTCGCCCCGCCGCTGCCCGGCCCACCACGCCGCGTACCCGGCCAGCCCGGAATCCCACCGCAGGGGCAGCTGCATCTTCCTTGCCCGCACCAAGTTGTGCCCGTACAAGAACTCTATGGCGTCTCCCACGCAGTTCCAGCAGAGGCCTTGCGAGATTCGGTATACCGTCTCGTTGCTCGGCGGCTTCCCGCTCTCCGCCGTCGCCGGCGGCGGTAGGGTGGTTGTGGTGA
Protein Sequence:
- >SMil_00002641-RA_Salv|Salvia_miltiorrhiza|MYB|SMil_00002641-RA_Salv
MGRAPCCDKANVKKGPWSPEEDFKLKSYIDQFGTGNNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRHRKPAPIPGQEAAGEDAFDLYNLSSSALERLQLHMQLQSLQNPLSLFNNHLQQKMIQTLDSLNPHQLIAPPAFGQAPMAEQINPLLLDEKSCGFAAEENLQPVGDDEFDCFKEMGGVERENLAWWCNEFEVKSTSSSSWDSTAVIDHQIYGDYDMVLRDCDGKIVAAAAYRVGRTETLLMGELHAPLLAVHVVSDVSKGLDSLCDEMFAAFAPAKEHIVFNFRRPRGTSAPPRSRPAAARPTTPRTRPARNPTAGAAASSLPAPSCARTRTLWRLPRSSSRGLARFGIPSRCSAASRSPPSPAAVGWLW