Information report for PGSC0003DMP400040530
Gene Details
|
|
Functional Annotation
- Refseq: XP_016574541.1 — PREDICTED: transcription factor MYB108-like
- TrEMBL: M1C5G2 — M1C5G2_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400060236 — (Solanum tuberosum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- MYB factors represent a family of proteins that include the conserved MYB DNA-binding domain.The first MYB gene identified was the ‘oncogene’ v-Myb derived from the avian myeloblastosis virus . Evidence obtained from sequence comparisons indicates that v-Myb may have originated from a vertebrate gene, which mutated once it became part of the virus. Many vertebrates contain three genes related to v-Myb c-Myb, A-Myb and B-Myb and other similar genes have been identified in insects, plants, fungi and slime moulds. The encoded proteins are crucial to the control of proliferation and differentiation in a number of cell types, and share the conserved MYB DNA-binding domain. This domain generally comprises up to three imperfect repeats, each forming a helix-turn-helix structure of about 53 amino acids. Three regularly spaced tryptophan residues, which form a tryptophan cluster in the three-dimensional helix-turn-helix structure, are characteristic of a MYB repeat. The three repeats in c-Myb are referred to as R1, R2 and R3; and repeats from other MYB proteins are categorised according to their similarity to either R1, R2 or R3.
- In contrast to animals, plants contain a MYB-protein subfamily that is characterised by the R2R3-type MYB domain. MYB proteins can be classified into three subfamilies depending on the number of adjacent repeats in the MYB domain (one, two or three). We refer to MYB-like proteins with one repeat as ‘MYB1R factors’, with two as ‘R2R3-type MYB’ factors, and with three repeats as ‘MYB3R’ factors.
Literature and News
Gene Resources
Homologs
- Capsicum annuum: CA05g18430
- Daucus carota: DCAR_002875
- Gossypium arboreum: Cotton_A_26358_BGI-A2_v1.0, Cotton_A_33185_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D12G1271, Gh_D07G1261, Gh_D11G1160, Gh_A07G1162
- Nicotiana benthamiana: Niben101Scf08782g00003.1
- Nicotiana tabacum: XP_016487451.1, XP_016444804.1
- Populus trichocarpa: Potri.002G198100.1
- Prunus mume: XP_008223335.1
- Prunus persica: Prupe.1G125300.1.p
- Sesamum indicum: XP_011071652.1
- Ziziphus jujuba: XP_015891841.1
Sequences
CDS Sequence:
- >PGSC0003DMP400040530|Solanum_tuberosum|MYB|PGSC0003DMP400040530
ATGGTGAAGGCACCTTGTTGTGAAAATTTTGGGCTAAAAAAAGGAAAATGGACAGATGAAGAAGATGAATTATTAGTGAAGTATATTCAAGTTAATGGAGAAGGTTCATGGAGGTCTCTTCCCAAAAATGCTGGTTTATCAAGATGTGGAAAGAGTTGCAGATTAAGATGGACAAATTATTTGAGACCAAATTTGAAGAGAGGCAAATTTACTGCAGAAGAAGATGAAATCATTGTCAAATTGCATAGCACCTTGGGAAATAGGTGGTCTTCGATAGCCCAACTTTTGTCTGGACGAACAGATAATGATATAAAGAACTATTGGAATTCCAACTTACGTAGGAGAATTTACACCTTTAGAAATCTCAAAGAGCTTATTAAAACCACTGCAAATGTACCGAAAATTGTGGTTGATGGCAGTTGTGGCGAATCCTCGATAAAACAAGGCACAACTATAGGGTCAGAAGGGGGTTCAATTGAATCTTTTTTACCCGAAAAGAATATAGTTGATGATATAGGTTCCCCTCGAAAAAACAACTCCTCGTTATGTGATGATAGCCGGGGAGATACTACGTTGTCTGAAGGGAGATCAATTGAATCTCTTTTGCCGGAAGATAATATTGTTGTTGATAGAGGTTCCACTCGGAAAAGTGACTCATCATGTCTTGGAAGCAAGGACGAAGCTATGTGGTCCGAAGGGAATTCAATTGAATCTCTTTTACCGAAAAATTATAATGTTGATATAGGTTCCCTTCGAAAATCCAACTCCTTATGTCCTAGAGACAAGGACGATGCTACGTGGTTGGGAGTGGGTTTAATTGAATCCCTTTTGTCGGAAGATATAGAAACCAACTCCTCATGTTCTAGAGGCATGAGCAATGCTACGTGGTCTGAAGAGAATTCAATTGAATCCCTTTTGGTGGAAAATTATGTCGTTGACATAGGTTCTAATCAAGAAACCAACTTCTCATGTCTTGAAGGCAAGGACGGCGCTACGTGGTCTGAGGAAGGGGTTTCATTTGAATCTCTTTTGCTAGAAAATATAGAAACCAACTCCGCATGTCATAACTGGTTTGAAGAGAGTTCAATTGAATCTTTTTTGTTAGAAAGTTATATCGTTGATATAGTATGTAACCGAGAAACCAACTCCTCATATCTTGAAGACCCCGCTATGTGGTCTGAAGAAGGGAGTTCAATTGAATACCCGTTAATGGAAAATTATTCTGTTGATCAAGGTTCTAATCGAGAAACCAACTTCTCATGTCTAAGAGGCAAGGATGGAGCTATGTCGTCCGAAGAAGGGAGTTCAATTGAATCCTTGTTGACGAAAAATTATATTGATGATCTAGAATTTCTGACTCAGTCATCGCTGGACGAAATCAAAGGACTAGCCATGCAATAA
Protein Sequence:
- >PGSC0003DMP400040530|Solanum_tuberosum|MYB|PGSC0003DMP400040530
MVKAPCCENFGLKKGKWTDEEDELLVKYIQVNGEGSWRSLPKNAGLSRCGKSCRLRWTNYLRPNLKRGKFTAEEDEIIVKLHSTLGNRWSSIAQLLSGRTDNDIKNYWNSNLRRRIYTFRNLKELIKTTANVPKIVVDGSCGESSIKQGTTIGSEGGSIESFLPEKNIVDDIGSPRKNNSSLCDDSRGDTTLSEGRSIESLLPEDNIVVDRGSTRKSDSSCLGSKDEAMWSEGNSIESLLPKNYNVDIGSLRKSNSLCPRDKDDATWLGVGLIESLLSEDIETNSSCSRGMSNATWSEENSIESLLVENYVVDIGSNQETNFSCLEGKDGATWSEEGVSFESLLLENIETNSACHNWFEESSIESFLLESYIVDIVCNRETNSSYLEDPAMWSEEGSSIEYPLMENYSVDQGSNRETNFSCLRGKDGAMSSEEGSSIESLLTKNYIDDLEFLTQSSLDEIKGLAMQ*